Annotations: 3AK8

Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3ak8l_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
K	d3ak8k_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
J	d3ak8j_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
I	d3ak8i_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
H	d3ak8h_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
G	d3ak8g_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
F	d3ak8f_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
E	d3ak8e_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
D	d3ak8d_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
C	d3ak8c_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
B	d3ak8b_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)
A	d3ak8a_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	(Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 ) [TaxId: 439842 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Gal-bind_lectin	e3ak8L1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
K	Gal-bind_lectin	e3ak8K1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
J	Gal-bind_lectin	e3ak8J1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
I	Gal-bind_lectin	e3ak8I1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
H	Gal-bind_lectin	e3ak8H1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
G	Gal-bind_lectin	e3ak8G1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
F	Gal-bind_lectin	e3ak8F1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
E	Gal-bind_lectin	e3ak8E1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
D	Gal-bind_lectin	e3ak8D1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
C	Gal-bind_lectin	e3ak8C1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
B	Gal-bind_lectin	e3ak8B1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Gal-bind_lectin	ECOD (v295.2)
A	Neur_chan_LBD	e3ak8A1	A: alpha arrays	X: Acyl-CoA binding protein-like	H: Macro domain-like	T: Macro domain-like	F: Neur_chan_LBD	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DNA protection during starvation protein	DNA binding binding nucleic acid binding oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023067	DNA protection during starvation protein, gammaproteobacteria	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023188	DNA-binding protein Dps, conserved site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.