3A13
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035844 | 3001258 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035841 | 3000552 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02788 | e3a13A1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
A | PF00016 | e3a13A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
B | PF02788 | e3a13B1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
B | PF00016 | e3a13B2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
C | PF02788 | e3a13C1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
C | PF00016 | e3a13C2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
D | PF02788 | e3a13D1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
D | PF00016 | e3a13D2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
E | PF02788 | e3a13E1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
E | PF00016 | e3a13E2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
F | PF02788 | e3a13F1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
F | PF00016 | e3a13F2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
G | PF02788 | e3a13G1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
G | PF00016 | e3a13G2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
H | PF02788 | e3a13H1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
H | PF00016 | e3a13H2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
I | PF02788 | e3a13I1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
I | PF00016 | e3a13I2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
J | PF02788 | e3a13J1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
J | PF00016 | e3a13J2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036376 | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal | Domain | |
IPR033966 | RuBisCO | Family | |
IPR036422 | RuBisCO large subunit, N-terminal domain superfamily | Homologous Superfamily | |
IPR017712 | Ribulose bisphosphate carboxylase, type III | Family | |
IPR017443 | Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal | Domain |