2ZO9
Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal ion preference
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d2zo9b1 | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | GpdQ-like | Glycerophosphodiesterase GpdQ | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
B [auth C] | d2zo9c_ | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | GpdQ-like | Glycerophosphodiesterase GpdQ | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Metallo-dependent phosphatases | 8040366 | 3001067 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Metallo-dependent phosphatases | 8040366 | 3001067 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00149 | e2zo9B1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF00149 | ECOD (1.6) |
B [auth C] | PF00149 | e2zo9C1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF00149 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.60.21.40 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
A [auth B] | 3.30.750.180 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | GpdQ, beta-strand dimerisation domain | CATH (4.3.0) |
B [auth C] | 3.60.21.40 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
B [auth C] | 3.30.750.180 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | GpdQ, beta-strand dimerisation domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth C] | PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth C] | IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain |
A [auth B], B [auth C] | IPR026575 | Cyclic nucleotide phosphodiesterase GpdQ/CpdA-like | Family |
A [auth B], B [auth C] | IPR042283 | GpdQ, catalytic alpha/beta sandwich domain | Homologous Superfamily |
A [auth B], B [auth C] | IPR050884 | Cyclic nucleotide phosphodiesterase class-III | Family |
A [auth B], B [auth C] | IPR042281 | GpdQ, beta-strand dimerisation domain | Homologous Superfamily |
A [auth B], B [auth C] | IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily |