Annotations: 2Y5P

B-repeat of Listeria monocytogenes InlB (internalin B)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	InlB B repeat-like	8053906	3002244	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	InlB B repeat-like	8053906	3002244	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	InlB B repeat-like	8053906	3002244	SCOP2B (2022-06-29)
A	SCOP2 Family	Listeria-Bacteroides repeat domain-like	8044959	4004225	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	InlB B repeat-like	8053906	3002244	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Flg_new	e2y5pD1	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: Flg_new	ECOD (v294.2)
C	Ribosomal_L18A	e2y5pC1	A: beta barrels	X: FXYD family	H: Integrin beta-1D cytoplasmic tail	T: Integrin beta-1D cytoplasmic tail	F: Ribosomal_L18A	ECOD (v294.2)
B	Ribosomal_L18A	e2y5pB1	A: beta barrels	X: FXYD family	H: Integrin beta-1D cytoplasmic tail	T: Integrin beta-1D cytoplasmic tail	F: Ribosomal_L18A	ECOD (v294.2)
A	Ribosomal_L18A	e2y5pA1	A: beta barrels	X: FXYD family	H: Integrin beta-1D cytoplasmic tail	T: Integrin beta-1D cytoplasmic tail	F: Ribosomal_L18A	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.4270	Mainly Beta	Sandwich	Immunoglobulin-like	Listeria-Bacteroides repeat domain	CATH (4.3.0)
C	2.60.40.4270	Mainly Beta	Sandwich	Immunoglobulin-like	Listeria-Bacteroides repeat domain	CATH (4.3.0)
B	2.60.40.4270	Mainly Beta	Sandwich	Immunoglobulin-like	Listeria-Bacteroides repeat domain	CATH (4.3.0)
A	2.60.40.4270	Mainly Beta	Sandwich	Immunoglobulin-like	Listeria-Bacteroides repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt) (Flg_new)	Listeria-Bacteroides repeat domain (List_Bact_rpt)	This model describes a conserved core region of about 43 residues [1] which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies ...	This model describes a conserved core region of about 43 residues [1] which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	INTERNALIN B	binding lipid binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	-	cellular anatomical structure extracellular region cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR025875	Leucine rich repeat 4	Repeat
A, B, C, D	IPR025987	GW domain	Domain
A, B, C, D	IPR013378	Internalin B-like, B-repeat	Repeat
A, B, C, D	IPR001611	Leucine-rich repeat	Repeat
A, B, C, D	IPR038200	GW domain superfamily	Homologous Superfamily
A, B, C, D	IPR012569	Internalin, Ig-like inter-repeat region	Domain
A, B, C, D	IPR024634	Internalin, N-terminal	Domain
A, B, C, D	IPR042229	Listeria-Bacteroides repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B, C, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
A, B, C, D	IPR050836	SDS22/Internalin LRR-containing	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.