Crystal Structure of Pseudomonas Aeruginosa OpdK with Vanillate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2y2xb_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Outer membrane carboxylate (Occ) channels | OccK-like (OprK-like) | OpdK porin (OccK1) | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
| A | d2y2xa_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Outer membrane carboxylate (Occ) channels | OccK-like (OprK-like) | OpdK porin (OccK1) | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | DHDPS | e2y2xB1 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: DHDPS | ECOD (v295.2) |
| A | Ribonuclease_3 | e2y2xA2 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: Ribonuclease_3 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
| A | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| VANILLATE PORIN OPDK | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR023614 | Porin domain superfamily | Homologous Superfamily | |
| IPR005318 | Outer membrane porin, bacterial | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
