2XS1
Crystal Structure of ALIX in complex with the SIVmac239 PYKEVTEDL Late Domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ALIX_LYPXL_bnd | e2xs1A2 | A: alpha duplicates or obligate multimers | X: Alix V domain (From Topology) | H: Alix V domain (From Topology) | T: Alix V domain | F: ALIX_LYPXL_bnd | ECOD (1.6) |
A | BRO1 | e2xs1A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: BRO1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.280 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | alix/aip1 like domains | CATH (4.3.0) |
A | 1.20.120.560 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | alix/aip1 in complex with the ypdl late domain | CATH (4.3.0) |
A | 1.20.140.50 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13949 | ALIX V-shaped domain binding to HIV (ALIX_LYPXL_bnd) | ALIX V-shaped domain binding to HIV | The binding of the LYPxL motif of late HIV p6Gag and EIAV p9Gag to this domain is necessary for viral budding.This domain is generally central between an N-terminal Bro1 domain, Pfam:PF03097 and a C-terminal proline-rich domain. The retroviruses thus ... | Domain | |
PF03097 | BRO1-like domain (BRO1) | BRO1-like domain | - | Repeat | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004328 | BRO1 domain | Domain | |
IPR025304 | ALIX V-shaped domain | Domain | |
IPR038499 | BRO1 domain superfamily | Homologous Superfamily | |
IPR045251 | BRO1-like | Unknown | |
IPR000071 | Immunodeficiency lentiviral matrix, N-terminal | Domain | |
IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR050195 | Primate lentivirus group Gag polyprotein-like | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR012344 | Matrix protein, lentiviral and alpha-retroviral, N-terminal | Homologous Superfamily | |
IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |