2WMC | pdb_00002wmc

Crystal structure of eukaryotic initiation factor 4E from Pisum sativum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2wmce_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
H	d2wmch_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
G	d2wmcg_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
F	d2wmcf_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
D	d2wmcd_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
C	d2wmcc_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
B	d2wmcb_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
A	d2wmca_	Alpha and beta proteins (a+b)	eIF4e-like	eIF4e-like	automated matches	automated matches	GARDEN PEA (Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	eIF4e-like	8072942	3001871	SCOP2B (2022-06-29)
A	SCOP2 Family	Translation initiation factor eIF4e	8072941	4001578	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	eIF4e-like	8072942	3001871	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	SdrG_C_C	e2wmcE1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
H	SdrG_C_C	e2wmcH1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
G	SdrG_C_C	e2wmcG1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
F	SdrG_C_C	e2wmcF1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
D	SdrG_C_C	e2wmcD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
C	SdrG_C_C	e2wmcC1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
B	SdrG_C_C	e2wmcB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: SdrG_C_C	ECOD (v294.2)
A	SH2	e2wmcA1	A: beta barrels	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain	T: PTS-regulatory domain, PRD	F: SH2	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
H	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
G	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
F	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
D	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
C	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
B	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)
A	3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E	translation factor activity translation initiation factor activity RNA binding binding RNA 7-methylguanosine cap binding nucleic acid binding RNA cap binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex eukaryotic translation initiation factor 4F complex RNA cap binding complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023398	Translation Initiation factor eIF- 4e-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019770	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001040	Translation Initiation factor eIF- 4e	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.