Crystal structure of the stem and receptor binding domain of the spike protein P1 from bacteriophage PM2
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ribosomal_L7Ae | e2vveA1 | A: beta barrels | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB | T: C-terminal UvrC-binding domain of UvrB | F: Ribosomal_L7Ae | ECOD (v294.2) |
| A | Spike_JR2 | e2vveA2 | A: beta barrels | X: beta-propeller-like | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Spike_JR2 | ECOD (v294.2) |
| B | Ribosomal_L7Ae | e2vveB1 | A: beta barrels | X: Long alpha-hairpin | H: C-terminal UvrC-binding domain of UvrB | T: C-terminal UvrC-binding domain of UvrB | F: Ribosomal_L7Ae | ECOD (v294.2) |
| B | Spike_JR2 | e2vveB2 | A: beta barrels | X: beta-propeller-like | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Spike_JR2 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.770 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.120.720 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.120.770 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.120.720 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF22465 | Spike protein P1, second jelly-roll domain (Spike_JR2) | Spike protein P1, second jelly-roll domain | This entry represents the second jelly-roll domain of Spike protein P1 from Pseudoalteromonas phage PM2 [1]. | Domain | |
| PF22188 | Phage PM2 spike protein P1 (Phage_spike_P1) | Phage PM2 spike protein P1 | The spike protein P1, also known as Protein I, is a key component of the Pseudoalteromonas phage PM2 (Bacteriophage PM2). This protein is responsible for receptor binding and is located at the fivefold vertices of the viral capsid. It plays a crucial ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| SPIKE PROTEIN P1 | - | - |
