2VDH
Crystal structure of Chlamydomonas reinhardtii Rubisco with a large- subunit C172S mutation
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02788 | e2vdhA1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
A | PF00016 | e2vdhA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
B | PF02788 | e2vdhB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
B | PF00016 | e2vdhB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
C | PF02788 | e2vdhC1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
C | PF00016 | e2vdhC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
D | PF02788 | e2vdhD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
D | PF00016 | e2vdhD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
E | PF02788 | e2vdhE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
E | PF00016 | e2vdhE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
F | PF02788 | e2vdhF1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
F | PF00016 | e2vdhF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
G | PF02788 | e2vdhG1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
G | PF00016 | e2vdhG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
H | PF02788 | e2vdhH1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
H | PF00016 | e2vdhH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
I | PF00101 | e2vdhI1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
J | PF00101 | e2vdhJ1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
K | PF00101 | e2vdhK1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
L | PF00101 | e2vdhL1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
M | PF00101 | e2vdhM1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
N | PF00101 | e2vdhN1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
O | PF00101 | e2vdhO1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
P | PF00101 | e2vdhP1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN |
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RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 |
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InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 | |
KCX | Parent Component: LYS :  AA0030 | |
SMC | Parent Component: CYS :  AA0030 , AA0234 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 | |
MME | Parent Component: MET :  AA0030 , AA0234 , AA0064 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073 |