2R9Q | pdb_00002r9q

Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DCD	e2r9qA3	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: DCD	ECOD (1.6)
B	DCD	e2r9qB3	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: DCD	ECOD (1.6)
C	DCD	e2r9qC5	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: DCD	ECOD (1.6)
D	DCD	e2r9qD5	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: DCD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
B	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
C	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
D	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD) N-terminal domain (DCD_N)	2'-deoxycytidine 5'-triphosphate deaminase (DCD) N-terminal domain	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the N-terminal catalytic domain, which contains the active site ...	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the N-terminal catalytic domain, which contains the active site residues Arg115 and Glu138, important for its activity [1].	Domain
A, B, C, D	PF22569	2'-deoxycytidine 5'-triphosphate deaminase (DCD), C-terminal domain (DCD_C)	2'-deoxycytidine 5'-triphosphate deaminase (DCD), C-terminal domain	This entry includes several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13) (DCD) which consist of two dUTPase-like domains (PDBe:2r9q). This entry represents the C-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	2'-deoxycytidine 5'-triphosphate deaminase	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines hydrolase activity dCTP deaminase activity catalytic activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	nucleoside phosphate metabolic process 2'-deoxyribonucleotide metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process deoxyribose phosphate metabolic process nucleobase-containing compound metabolic process deoxyribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process nucleoside phosphate metabolic process 2'-deoxyribonucleotide metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process deoxyribose phosphate metabolic process nucleobase-containing compound metabolic process deoxyribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	-
E [auth X]	Synthetic peptide 1	-	-	-
F [auth Y]	Synthetic peptide 2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR053811	2'-deoxycytidine 5'-triphosphate deaminase, C-terminal domain	Domain
A, B, C, D	IPR033704	dUTPase, trimeric	Domain
A, B, C, D	IPR036157	dUTPase-like superfamily	Homologous Superfamily
A, B, C, D	IPR010550	2'-deoxycytidine 5'-triphosphate deaminase, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.