2QTV
Structure of Sec23-Sar1 complexed with the active fragment of Sec31
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Helical domain of Sec23/24 | 8024028 | 4002392 | SCOP2 (2022-06-29) |
A | SCOP2 Family | beta-sandwich domain of sec23/24 | 8024030 | 4002652 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Trunk domain of Sec23/24 | 8024031 | 4003060 | SCOP2 (2022-06-29) |
A | SCOP2 Family | C-terminal, gelsolin-like domain of Sec23/24 | 8024032 | 4003304 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Zn-finger domain of Sec23/24 | 8024033 | 4003422 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | vWA-like | 8036410 | 3000832 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Ras-like monodomain GTPases | 8060248 | 4004043 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Family | Sec31 Sec23.Sar1-binding region-like | 8046618 | 4005194 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Superfamily | Sec31 Sec23.Sar1-binding region-like | 8102959 | 3002767 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec23_BS | e2qtvA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
A | Sec23_helical | e2qtvA2 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
A | Gelsolin | e2qtvA3 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
A | Sec23_trunk | e2qtvA5 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
A | zf-Sec23_Sec24 | e2qtvA4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
B | Ras | e2qtvB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1670 | Mainly Beta | Sandwich | Immunoglobulin-like | beta-sandwich domain of Sec23/24 | CATH (4.3.0) |
A | 2.30.30.380 | Mainly Beta | Roll | SH3 type barrels. | Zn-finger domain of Sec23/24 | CATH (4.3.0) |
A | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (4.3.0) |
A | 1.20.120.730 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Sec23/Sec24 helical domain | CATH (4.3.0) |
A | 3.40.20.10 | Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04815 | Sec23/Sec24 helical domain (Sec23_helical) | Sec23/Sec24 helical domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF00626 | Gelsolin repeat (Gelsolin) | Gelsolin repeat | - | Domain | |
PF08033 | Sec23/Sec24 beta-sandwich domain (Sec23_BS) | Sec23/Sec24 beta-sandwich domain | - | Domain | |
PF04811 | Sec23/Sec24 trunk domain (Sec23_trunk) | Sec23/Sec24 trunk domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF04810 | Sec23/Sec24 zinc finger (zf-Sec23_Sec24) | Sec23/Sec24 zinc finger | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF00025 | ADP-ribosylation factor family (Arf) | ADP-ribosylation factor family | Pfam combines a number of different Prosite families together | Domain | |