2QKW
Structural basis for activation of plant immunity by bacterial effector protein AvrPto
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2qkwa1 | All alpha proteins | immunoglobulin/albumin-binding domain-like | Avirulence protein AvrPto | Avirulence protein AvrPto | Avirulence protein AvrPto | (Pseudomonas syringae ) [TaxId: 317 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Avirulence protein AvrPto | 8023693 | 4002926 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Avirulence protein AvrPto | 8036073 | 3001906 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Protein kinases catalytic domain-like | 8077660 | 4003661 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Protein kinase-like (PK-like) | 8077661 | 3000066 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AvrPto | e2qkwA1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Avirulence protein AvrPto (From Topology) | T: Avirulence protein AvrPto | F: AvrPto | ECOD (1.6) |
B | Pkinase_Tyr | e2qkwB1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1270.140 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
B | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
B | 1.10.510.10 | Mainly Alpha | Orthogonal Bundle | Transferase(Phosphotransferase) | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11592 | Central core of the bacterial effector protein AvrPto (AvrPto) | Central core of the bacterial effector protein AvrPto | - | Family | |
PF07714 | Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr) | Protein tyrosine and serine/threonine kinase | Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosph ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020996 | Type III secretion system, AvrPto | Family | |
IPR036532 | AvrPto superfamily | Homologous Superfamily | |
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR000719 | Protein kinase domain | Domain | |
IPR001245 | Serine-threonine/tyrosine-protein kinase, catalytic domain | Domain | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR045272 | Receptor-like protein kinase ANXUR1-like | Family |