Crystal structure of the f1-atpase from the thermoalkaliphilic bacterium bacillus sp. ta2.a1


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd2qe7f3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Fd2qe7f1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Fd2qe7f2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ed2qe7e2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Dd2qe7d2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Gd2qe7g_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Cd2qe7c2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Bd2qe7b2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)
Ad2qe7a2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Bacillus sp. TA2.A1 ) [TaxId: 90973 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2B (2022-06-29)
DSCOP2 FamilyATP synthase alpha/beta N-terminal domain-like 8056920 4002275 SCOP2 (2022-06-29)
DSCOP2 FamilyATP synthase nucleotide-binding domain-like 8056922 4004011 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056921 3001034 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyRecA-like P-loop NTPases 8056923 3002019 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056924 3000684 SCOP2 (2022-06-29)
GSCOP2 FamilyATP synthase gamma subunit-like 8072562 4000503 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyATP synthase gamma subunit-like 8072563 3000451 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2B (2022-06-29)
ASCOP2 FamilyATP synthase alpha/beta N-terminal domain-like 8056884 4002275 SCOP2 (2022-06-29)
ASCOP2 FamilyATP synthase nucleotide-binding domain-like 8056886 4004011 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta N-terminal domain-like 8056885 3001034 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRecA-like P-loop NTPases 8056887 3002019 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056888 3000684 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FPK_Tyr_Ser-Thre2qe7F1 A: beta barrelsX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.2)
FV-sete2qe7F4 A: beta barrelsX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.2)
EPK_Tyr_Ser-Thre2qe7E1 A: beta barrelsX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.2)
EV-sete2qe7E4 A: beta barrelsX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.2)
DPkinasee2qe7D3 A: beta barrelsX: Profilin-likeH: sensor domainsT: sensor domainsF: PkinaseECOD (v294.2)
DV-sete2qe7D4 A: beta barrelsX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.2)
GPHPe2qe7G2 A: beta barrelsX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PHPECOD (v294.2)
Hfn3e2qe7H1 A: beta barrelsX: Profilin-likeH: sensor domainsT: sensor domainsF: fn3ECOD (v294.2)
CPK_Tyr_Ser-Thre2qe7C1 A: beta barrelsX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.2)
BPK_Tyr_Ser-Thre2qe7B1 A: beta barrelsX: HTHH: NudixT: NudixF: PK_Tyr_Ser-ThrECOD (v294.2)
APkinasee2qe7A1 A: beta barrelsX: Profilin-likeH: sensor domainsT: sensor domainsF: PkinaseECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
F1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
E2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
E3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
E1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
D2.40.10.170 Mainly Beta Beta Barrel Thrombin, subunit H CATH (4.3.0)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
D1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
G1.10.287.80 Mainly Alpha Orthogonal Bundle Helix Hairpins ATP synthase, gamma subunit, helix hairpin domainCATH (4.3.0)
G3.40.1380.10 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
H2.60.15.10 Mainly Beta Sandwich ATP Synthase domain 1CATH (4.3.0)
H1.20.5.440 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces ATP synthase delta/epsilon subunit, C-terminal domainCATH (4.3.0)
C2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
C1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)
B2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)
A2.40.30.20 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A1.20.150.20 Mainly Alpha Up-down Bundle Lysin ATP synthase alpha/beta chain, C-terminal domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, E, F
ATP synthase subunit beta -
ATP synthase subunit gamma
ATP synthase subunit epsilon -
A, B, C
ATP synthase subunit alpha -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
D, E, F
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR050053ATPase alpha/beta chainsFamily
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F
IPR003593AAA+ ATPase domainDomain
D, E, F
IPR005722ATP synthase, F1 complex, beta subunitFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
IPR000131ATP synthase, F1 complex, gamma subunitFamily
IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
IPR020547ATP synthase epsilon subunit, C-terminal domainDomain
IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
A, B, C
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR000793ATP synthase, alpha subunit, C-terminalDomain
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR005294ATP synthase, F1 complex, alpha subunitFamily
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily