2Q1F
Crystal structure of chondroitin sulfate lyase abc from bacteroides thetaiotaomicron wal2926
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lyase_N | e2q1fA3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Lyase_N | ECOD (1.6) |
A | Lyase_8_C_1 | e2q1fA4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Hyaluronate lyase-like, C-terminal domain (From Topology) | T: Hyaluronate lyase-like, C-terminal domain | F: Lyase_8_C_1 | ECOD (1.6) |
A | Lyase_8 | e2q1fA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Lyase_8 | ECOD (1.6) |
A | Lyase_catalyt | e2q1fA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Lyase_catalyt | ECOD (1.6) |
B | Lyase_N | e2q1fB7 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Lyase_N | ECOD (1.6) |
B | Lyase_8_C_1 | e2q1fB8 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Hyaluronate lyase-like, C-terminal domain (From Topology) | T: Hyaluronate lyase-like, C-terminal domain | F: Lyase_8_C_1 | ECOD (1.6) |
B | Lyase_8 | e2q1fB6 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Lyase_8 | ECOD (1.6) |
B | Lyase_catalyt | e2q1fB5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Lyase_catalyt | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.430 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding lectin | CATH (4.3.0) |
A | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
A | 2.70.98.10 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 2.60.220.10 | Mainly Beta | Sandwich | Chondroitinase Ac | Chain A, domain 3 | CATH (4.3.0) |
B | 2.60.120.430 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding lectin | CATH (4.3.0) |
B | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
B | 2.70.98.10 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
B | 2.60.220.10 | Mainly Beta | Sandwich | Chondroitinase Ac | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02278 | Polysaccharide lyase family 8, super-sandwich domain (Lyase_8) | Polysaccharide lyase family 8, super-sandwich domain | - | Family | |
PF09092 | Lyase, N terminal (Lyase_N) | Lyase, N terminal | Members of this family are predominantly found in chondroitin ABC lyase I, and adopt a jelly-roll fold topology consisting of a two-layered bent beta-sheet sandwich with one short alpha-helix. The convex beta sheet is composed of five antiparallel st ... | Domain | |
PF09093 | Lyase, catalytic (Lyase_catalyt) | Lyase, catalytic | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039174 | Chondroitin sulfate ABC lyase | Family | |
IPR011071 | Polysaccharide lyase family 8-like, C-terminal | Homologous Superfamily | |
IPR024200 | Chondroitin sulfate ABC endolyase | Family | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR015177 | Lyase, catalytic | Domain | |
IPR003159 | Polysaccharide lyase family 8, central domain | Domain | |
IPR008929 | Chondroitin AC/alginate lyase | Homologous Superfamily | |
IPR014718 | Glycoside hydrolase-type carbohydrate-binding | Homologous Superfamily | |
IPR015176 | Lyase, N-terminal | Domain | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |