2OST
The structure of a bacterial homing endonuclease : I-Ssp6803I
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2 Family | slr0915-like | 8046833 | 4005320 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | Restriction endonuclease-like | 8103670 | 3000104 | SCOP2 (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Restriction endonuclease-like | 8103670 | 3000104 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Restriction endonuclease-like | 8103670 | 3000104 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Restriction endonuclease-like | 8103670 | 3000104 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | PF11645 | e2ostA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF11645 | ECOD (1.6) |
E [auth C] | PF11645 | e2ostC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF11645 | ECOD (1.6) |
F [auth D] | PF11645 | e2ostD1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF11645 | ECOD (1.6) |
D [auth B] | PF11645 | e2ostB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF11645 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
E [auth C] | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
F [auth D] | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
D [auth B] | 3.40.1350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Trna Endonuclease | Chain: A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D] | PF11645 | PD-(D/E)XK endonuclease (PDDEXK_5) | PD-(D/E)XK endonuclease | This family of endonucleases includes a group I intron-encoded endonuclease [1]. This family belongs to the PD-(D/E)XK superfamily [2-3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth Y] | Synthetic DNA 29 MER | - | - | - |
B [auth Z] | Synthetic DNA 29 MER | - | - | - |
C [auth A], D [auth B], E [auth C], F [auth D] | Putative endonuclease | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B], E [auth C], F [auth D] | IPR021671 | PD(D/E)XK endonuclease | Domain |
C [auth A], D [auth B], E [auth C], F [auth D] | IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily |