2OKX
Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Alpha-L-rhamnosidase associated domain -like | 8051902 | 3002069 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | galactose-binding domain-like | 8051901 | 3000087 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Alpha-L-rhamnosidase associated domain -like | 8051904 | 3002069 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Six-hairpin glycosidases | 8051899 | 3000970 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | YicI C-terminal domain-like | 8051900 | 3000267 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Bacterial alpha-L-rhamnosidase-like | 8046913 | 4005365 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Alpha-L-rhamnosidase C-terminal domain-like | 8046916 | 4005366 | SCOP2 (2022-06-29) |
A | SCOP2 Family | alpha-L-rhamnosidase precatalytic domain-like | 8047398 | 4005623 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Alpha-L-rhamnosidase N-terminal domain-like | 8050959 | 4007126 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Alpha-L-rhamnosidase N-terminal domain-like | 8051903 | 4007126 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Six-hairpin glycosidases | 8051899 | 3000970 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | YicI C-terminal domain-like | 8051900 | 3000267 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | galactose-binding domain-like | 8051901 | 3000087 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Alpha-L-rhamnosidase associated domain -like | 8051902 | 3002069 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Alpha-L-rhamnosidase associated domain -like | 8051904 | 3002069 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Bac_rhamnosid_N | e2okxB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Bac_rhamnosid_N | ECOD (1.6) |
B | Bac_rhamnosid | e2okxB2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Bac_rhamnosid | ECOD (1.6) |
B | EUF07628 | e2okxB3 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: EUF07628 | ECOD (1.6) |
B | Bac_rhamnosid_C | e2okxB5 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycoside hydrolase family 127 middle domain-related (From Topology) | T: Glycoside hydrolase family 127 middle domain-related | F: Bac_rhamnosid_C | ECOD (1.6) |
B | Bac_rhamnosid6H | e2okxB4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Bac_rhamnosid6H | ECOD (1.6) |
A | Bac_rhamnosid_N | e2okxA4 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Bac_rhamnosid_N | ECOD (1.6) |
A | Bac_rhamnosid | e2okxA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Bac_rhamnosid | ECOD (1.6) |
A | EUF07628 | e2okxA6 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: EUF07628 | ECOD (1.6) |
A | Bac_rhamnosid_C | e2okxA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycoside hydrolase family 127 middle domain-related (From Topology) | T: Glycoside hydrolase family 127 middle domain-related | F: Bac_rhamnosid_C | ECOD (1.6) |
A | Bac_rhamnosid6H | e2okxA5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Bac_rhamnosid6H | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
B | 2.60.420.10 | Mainly Beta | Sandwich | Maltose phosphorylase, domain 3 | Maltose phosphorylase, domain 3 | CATH (4.3.0) |
B | 1.50.10.10 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
A | 2.60.420.10 | Mainly Beta | Sandwich | Maltose phosphorylase, domain 3 | Maltose phosphorylase, domain 3 | CATH (4.3.0) |
A | 1.50.10.10 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05592 | Bacterial alpha-L-rhamnosidase concanavalin-like domain (Bac_rhamnosid) | Bacterial alpha-L-rhamnosidase concanavalin-like domain | This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are impo ... | Domain | |
PF08531 | Alpha-L-rhamnosidase N-terminal domain (Bac_rhamnosid_N) | Alpha-L-rhamnosidase N-terminal domain | This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. | Domain | |
PF17389 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain (Bac_rhamnosid6H) | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain | - | Repeat | |
PF17390 | Bacterial alpha-L-rhamnosidase C-terminal domain (Bac_rhamnosid_C) | Bacterial alpha-L-rhamnosidase C-terminal domain | This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are impo ... | Domain | |
PF21557 | Alpha-L-rhamnosidase, domain D2 (RhaB_D2) | Alpha-L-rhamnosidase, domain D2 | This domain is found in Alpha-L-rhamnosidase from Bacillus sp. (RhaB), a member of glycoside hydrolase (GH) family 78 that catalyses the hydrolytic release of rhamnose from polysaccharides and glycosides, degrading the bacterial biofilm gellan. RhaB ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Rhamnosidase B | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR035398 | Alpha-L-rhamnosidase C-terminal domain | Domain | |
IPR035396 | Alpha-L-rhamnosidase, six-hairpin glycosidase domain | Domain | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR013737 | Bacterial alpha-L-rhamnosidase N-terminal | Domain | |
IPR048653 | Alpha-L-rhamnosidase, domain D2 | Domain | |
IPR008902 | Alpha-L-rhamnosidase, concanavalin-like domain | Domain |