2OB7
Structure of tmRNA-(SmpB)2 complex as inferred from cryo-EM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | d2ob7b1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
D [auth C] | d2ob7c1 | All beta proteins | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | Small protein B (SmpB) | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth B] | SCOP2B Superfamily | Small protein B (SmpB) | 8040098 | 3000956 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Small protein B (SmpB) | 8040098 | 3000956 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | SmpB | e2ob7B1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: SmpB | ECOD (1.6) |
D [auth C] | SmpB | e2ob7C1 | A: beta barrels | X: OB-fold | H: Small protein B (SmpB) (From Topology) | T: Small protein B (SmpB) | F: SmpB | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth B], D [auth C] | PF01668 | SmpB protein (SmpB) | SmpB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
transfer-messenger RNA | - | - | - | |
B [auth D] | 16S ribosomal RNA | - | - | - |
C [auth B], D [auth C] | SsrA-binding protein |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth B], D [auth C] | IPR020081 | SsrA-binding protein, conserved site | Conserved Site |
C [auth B], D [auth C] | IPR023620 | Small protein B | Homologous Superfamily |
C [auth B], D [auth C] | IPR000037 | SsrA-binding protein | Family |