2NZ1
Viral Chemokine Binding Protein M3 From Murine Gammaherpesvirus68 In Complex With The CC-Chemokine CCL2/MCP-1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Viral chemokine binding protein m3 | 8043647 | 3001430 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Viral chemokine binding protein m3 | 8043647 | 3001430 | SCOP2B (2022-06-29) |
E [auth X] | SCOP2B Superfamily | Viral chemokine binding protein m3 | 8043647 | 3001430 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8034307 | 3001955 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8034307 | 3001955 | SCOP2B (2022-06-29) |
F [auth Y] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8034307 | 3001955 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | M3_C | e2nz1A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_C | ECOD (1.6) |
A | M3_N | e2nz1A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_N | ECOD (1.6) |
B | M3_C | e2nz1B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_C | ECOD (1.6) |
B | M3_N | e2nz1B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_N | ECOD (1.6) |
E [auth X] | M3_C | e2nz1X2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_C | ECOD (1.6) |
E [auth X] | M3_N | e2nz1X1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: M3_N | ECOD (1.6) |
C [auth D] | IL8 | e2nz1D1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8 | ECOD (1.6) |
D [auth E] | IL8 | e2nz1E1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8 | ECOD (1.6) |
F [auth Y] | IL8 | e2nz1Y1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1330 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1340 | Mainly Beta | Sandwich | Immunoglobulin-like | Chemokine-binding protein M3-like | CATH (4.3.0) |
B | 2.60.40.1330 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.60.40.1340 | Mainly Beta | Sandwich | Immunoglobulin-like | Chemokine-binding protein M3-like | CATH (4.3.0) |
E [auth X] | 2.60.40.1330 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
E [auth X] | 2.60.40.1340 | Mainly Beta | Sandwich | Immunoglobulin-like | Chemokine-binding protein M3-like | CATH (4.3.0) |
C [auth D] | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
D [auth E] | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
F [auth Y] | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, E [auth X] | PF09213 | M3 (M3) | M3 | Members of this family of viral chemokine binding proteins adopt a structure consisting of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds. They bind with the CC-chemokine MCP-1, acting as cytokine d ... | Domain |
C [auth D], D [auth E], F [auth Y] | PF00048 | Small cytokines (intecrine/chemokine), interleukin-8 like (IL8) | Small cytokines (intecrine/chemokine), interleukin-8 like | Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, E [auth X] | IPR015950 | Chemokine-binding M3, subdomain 1, viral | Homologous Superfamily |
A, B, E [auth X] | IPR015951 | Chemokine-binding M3, subdomain 2, viral | Homologous Superfamily |
A, B, E [auth X] | IPR015296 | Chemokine-binding M3, viral | Family |
A, B, E [auth X] | IPR036323 | Chemokine-binding M3 superfamily | Homologous Superfamily |
C [auth D], D [auth E], F [auth Y] | IPR001811 | Chemokine interleukin-8-like domain | Domain |
C [auth D], D [auth E], F [auth Y] | IPR000827 | CC chemokine, conserved site | Conserved Site |
C [auth D], D [auth E], F [auth Y] | IPR036048 | Chemokine interleukin-8-like superfamily | Homologous Superfamily |
C [auth D], D [auth E], F [auth Y] | IPR039809 | Chemokine beta/gamma/delta | Family |