2NXN
T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with ribosomal protein L11
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2nxna1 | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | Ribosomal protein L11 methyltransferase PrmA | PrmA-like protein TTHA0656 (TT0836) | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
B | d2nxnb1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Ribosomal protein L11, C-terminal domain | Ribosomal protein L11, C-terminal domain | Ribosomal protein L11, C-terminal domain | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
B | d2nxnb2 | Alpha and beta proteins (a+b) | Ribosomal L11/L12e N-terminal domain | Ribosomal L11/L12e N-terminal domain | Ribosomal L11/L12e N-terminal domain | Ribosomal protein L11, N-terminal domain | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8041051 | 3000118 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8040122 | 3000950 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8034177 | 3001186 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | prmA_like | e2nxnA2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L11 methyltransferase PrmA N-terminal ferredoxin-like domain (From Topology) | T: Ribosomal protein L11 methyltransferase PrmA N-terminal ferredoxin-like domain | F: prmA_like | ECOD (1.6) |
A | Methyltransf_11_4 | e2nxnA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
B | Ribosomal_L11 | e2nxnB1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
B | Ribosomal_L11_N | e2nxnB2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1170 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Sun protein | CATH (4.3.0) |
A | 1.20.5.1350 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 3.30.1550.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal protein L11, N-terminal domain | Ribosomal protein L11/L12, N-terminal domain | CATH (4.3.0) |
B | 1.10.10.250 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Ribosomal protein L11/L12, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06325 | Ribosomal protein L11 methyltransferase (PrmA) (PrmA) | Ribosomal protein L11 methyltransferase (PrmA) | - | Family | |
PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain | |
PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Ribosomal protein L11 methyltransferase | ||||
50S ribosomal protein L11 |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050078 | Ribosomal protein L11 methyltransferase PrmA | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR004498 | Ribosomal protein L11 methyltransferase | Family | |
IPR020785 | Large ribosomal subunit protein uL11, conserved site | Conserved Site | |
IPR020783 | Large ribosomal subunit protein uL11, C-terminal | Domain | |
IPR000911 | Ribosomal protein uL11 | Family | |
IPR036769 | Large ribosomal subunit protein uL11, C-terminal domain superfamily | Homologous Superfamily | |
IPR006519 | Large ribosomal subunit protein uL11, bacterial-type | Family | |
IPR020784 | Large ribosomal subunit protein uL11, N-terminal | Domain | |
IPR036796 | Large ribosomal subunit protein uL11, N-terminal domain superfamily | Homologous Superfamily |