2N7Q

Structure of the transmembrane domain of human nicastrin in SDS micelles

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOG2657_like	e2n7qA1	A: extended segments	X: Nicastrin transmembrane helix (From Topology)	H: Nicastrin transmembrane helix (From Topology)	T: Nicastrin transmembrane helix	F: KOG2657_like	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Nicastrin	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity protein binding binding signaling receptor binding growth factor receptor binding protein-macromolecule adaptor activity molecular adaptor activity aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic endopeptidase activity, intramembrane cleaving aspartic-type endopeptidase activity catalytic activity endopeptidase activity protein binding binding signaling receptor binding growth factor receptor binding protein-macromolecule adaptor activity molecular adaptor activity ATPase binding enzyme binding	regulation of cellular process positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process cellular biosynthetic process positive regulation of biological process carbohydrate derivative metabolic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of amyloid precursor protein biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process amyloid precursor protein biosynthetic process positive regulation of macromolecule metabolic process regulation of cellular process positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process cellular biosynthetic process positive regulation of biological process carbohydrate derivative metabolic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of amyloid precursor protein biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process amyloid precursor protein biosynthetic process positive regulation of macromolecule metabolic process regulation of amyloid precursor protein biosynthetic process protein metabolic process amyloid precursor protein metabolic process regulation of glycoprotein biosynthetic process positive regulation of cellular process positive regulation of glycoprotein biosynthetic process carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process cellular metabolic process biological regulation glycoprotein biosynthetic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process regulation of cellular biosynthetic process biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process positive regulation of cell communication modulation of chemical synaptic transmission signaling cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality regulation of synaptic plasticity trans-synaptic signaling regulation of signaling cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation regulation of cell communication positive regulation of signaling behavior adult behavior multicellular organismal process developmental process oligodendrocyte development cellular developmental process central nervous system myelination cell development nervous system development glial cell development myelination multicellular organism development neurogenesis axon ensheathment in central nervous system central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation axon ensheathment ensheathment of neurons cell differentiation anatomical structure development system development cellular response to nitrogen compound cellular response to stimulus response to dopamine response to stimulus cellular response to dopamine response to monoamine response to catecholamine cellular response to catecholamine stimulus signal transduction response to organic cyclic compound G protein-coupled dopamine receptor signaling pathway cellular response to organic cyclic compound response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical G protein-coupled receptor signaling pathway cell surface receptor signaling pathway glutamate receptor signaling pathway gene expression protein maturation proteolysis protein processing head development animal organ development brain development cerebellum development metencephalon development hindbrain development amyloid precursor protein catabolic process amyloid-beta metabolic process amide metabolic process amyloid-beta formation cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion membrane protein intracellular domain proteolysis membrane protein proteolysis cell population proliferation cell activation lymphocyte activation leukocyte proliferation leukocyte activation immune system process mononuclear cell proliferation T cell activation lymphocyte proliferation T cell proliferation multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells myeloid cell homeostasis epithelial cell proliferation Notch receptor processing neuron apoptotic process apoptotic process cell death programmed cell death system process learning or memory nervous system process cognition short-term synaptic potentiation Notch signaling pathway membrane protein ectodomain proteolysis regulation of catalytic activity positive regulation of peptidase activity positive regulation of molecular function regulation of proteolysis regulation of endopeptidase activity regulation of peptidase activity positive regulation of catalytic activity regulation of molecular function positive regulation of hydrolase activity positive regulation of endopeptidase activity regulation of hydrolase activity positive regulation of proteolysis	anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle anchoring junction cell junction cellular anatomical entity focal adhesion cell-substrate junction membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle lytic vacuole endomembrane system bounding membrane of organelle vesicle membrane lysosome vacuolar membrane azurophil granule vacuole lytic vacuole membrane cytoplasmic vesicle membrane lysosomal membrane secretory granule primary lysosome secretory vesicle azurophil granule membrane organelle membrane secretory granule membrane cell periphery sarcolemma plasma membrane presynapse synapse presynaptic membrane plasma membrane region synaptic membrane protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane early endosome endosome Golgi apparatus Golgi membrane endosome membrane transport vesicle synaptic vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR041084	Nicastrin, small lobe	Domain
A	IPR008710	Nicastrin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q92542	Alzheimer disease acne inversa, familial, 1 hidradenitis suppurativa Hidradenitis suppurativa, familial astrocytic tumor glioblastoma large cell medulloblastoma oligodendroglioma atypical teratoid rhabdoid tumor malignant ependymoma osteosarcoma primitive neuroectodermal tumor malignant glioma pilocytic astrocytoma

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Intramembrane Proteases	γ-secretase nicastrin-a transmembrane domain in SDS:

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.