2MJA

Solution Structure of Domain-Swapped GLPG

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	GlpG (ecGlpG), N-terminal cytoplasmic domain-like	8047243	4005523	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NRho-like	8092202	3002569	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	NRho-like	8092202	3002569	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rhomboid_N	e2mjaA1	A: a+b two layers	X: Alpha-beta plaits	H: GlnB-like (From Topology)	T: GlnB-like	F: Rhomboid_N	ECOD (1.6)
B	Rhomboid_N	e2mjaB1	A: a+b two layers	X: Alpha-beta plaits	H: GlnB-like (From Topology)	T: GlnB-like	F: Rhomboid_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12122	Cytoplasmic N-terminal domain of rhomboid serine protease (Rhomboid_N)	Cytoplasmic N-terminal domain of rhomboid serine protease	Rhomboid_N is the N-terminal cytoplasmic domain of the rhomboid intra-membraneous serine protease, otherwise known as Peptidase_S54, Pfam:PF01694. This N-terminal domain has similarity to other GlnB-like domains, some of which appear to have a bindin ...	Rhomboid_N is the N-terminal cytoplasmic domain of the rhomboid intra-membraneous serine protease, otherwise known as Peptidase_S54, Pfam:PF01694. This N-terminal domain has similarity to other GlnB-like domains, some of which appear to have a binding role, eg to peptidoglycan. It is not clear exactly what the function of this domain is in the protease, but its presence is critical for maintaining a catalytically competent state for the protein [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Rhomboid protease GlpG	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR022732	Peptidase S54, GlpG peptidase, N-terminal	Domain
A, B	IPR038236	GlpG peptidase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR022764	Peptidase S54, rhomboid domain	Domain
A, B	IPR023662	Rhomboid protease GlpG	Family
A, B	IPR035952	Rhomboid-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.