2M8L
HIV capsid dimer structure
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Gag_p24_C | e2m8lA2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: Gag_p24_C | ECOD (1.6) |
A | Gag_p24_N | e2m8lA1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
B | Gag_p24_C | e2m8lB2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: Gag_p24_C | ECOD (1.6) |
B | Gag_p24_N | e2m8lB1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
A | 1.10.1200.30 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
B | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
B | 1.10.1200.30 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19317 | Gag protein p24 C-terminal domain (Gag_p24_C) | Gag protein p24 C-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |