2M3Z
NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2m3za_ | Small proteins | Retrovirus zinc finger-like domains | Retrovirus zinc finger-like domains | Retrovirus zinc finger-like domains | automated matches | HIV-1 (Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) ) [TaxId: 11698 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Retrovirus zinc finger-like domains | 8071578 | 4003651 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Retrovirus zinc finger-like domains | 8092971 | 4003651 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Retroviral zinc finger-like domains | 8071579 | 3001193 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Retroviral zinc finger-like domains | 8092972 | 3001193 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-CCHC_2 | e2m3zA2 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: zf-CCHC_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 4.10.60.10 | Few Secondary Structures | Irregular | HIV-1 Nucleocapsid Protein | Zinc finger, CCHC-type | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00098 | Zinc knuckle (zf-CCHC) | Zinc knuckle | The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eu ... | Domain |