2LYD
The solution structure of the Dm DCP1 EVH1 domain in complex with the XRN1 DBM peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DCP1 | e2lydA1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: DCP1 | ECOD (1.6) |
B | KOG2045_5th | e2lydB1 | A: extended segments | X: DCP1-binding motif (From Topology) | H: DCP1-binding motif (From Topology) | T: DCP1-binding motif | F: KOG2045_5th | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06058 | Dcp1-like decapping family (DCP1) | Dcp1-like decapping family | An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (Pfam:PF05026). The precise role of these proteins in the decapping reaction have not been es ... | Domain | |
PF18245 | 5-3 exonuclease XRN1 DCP1-binding motif (XRN1_DBM) | 5-3 exonuclease XRN1 DCP1-binding motif | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010334 | mRNA-decapping enzyme subunit 1 | Family | |
IPR031953 | mRNA-decapping enzyme, C-terminal | Domain | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR016494 | 5'-3' exoribonuclease 1 | Family | |
IPR040992 | 5'-3' exoribonuclease 1, D1 domain | Domain | |
IPR047007 | 5'-3' exoribonuclease 1, D1 domain superfamily | Homologous Superfamily | |
IPR047008 | 5'-3' exoribonuclease 1, SH3-like domain superfamily | Homologous Superfamily | |
IPR027073 | 5'-3' exoribonuclease | Family | |
IPR040587 | 5-3 exonuclease XRN1, DCP1-binding motif | Domain | |
IPR041106 | Exoribonuclease Xrn1, D2/D3 domain | Domain | |
IPR041385 | 5'-3' exoribonuclease 1, SH3-like domain | Domain | |
IPR041412 | Xrn1, helical domain | Domain | |
IPR004859 | Xrn1, N-terminal | Domain |