2LLI
Low resolution structure of RNA-binding subunit of the TRAMP complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-CCHC | e2lliA3 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: zf-CCHC | ECOD (1.6) |
A | zf-CCHC_2_like | e2lliA4 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: zf-CCHC_2_like | ECOD (1.6) |
A | zf-CCHC_2 | e2lliA1 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: zf-CCHC_2 | ECOD (1.6) |
A | AIR1_1st | e2lliA2 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: AIR1_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00098 | Zinc knuckle (zf-CCHC) | Zinc knuckle | The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eu ... | Domain | |
PF21759 | AIR2-like, CCHC-type 1 zinc finger 4 (AIR2-like_ZnK4) | AIR2-like, CCHC-type 1 zinc finger 4 | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016713 | Poly(A) polymerase complex subunit Air1/2, budding yeast | Family | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR051644 | TRAMP complex component and AT-rich DNA-binding protein | Family | |
IPR049024 | AIR2-like, CCHC-type 1 zinc finger 4 | Conserved Site |