2JNK
Solution structure of a dockerin-containing modular pair from a family 84 glycoside hydrolase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Dockerin_1 | e2jnkA2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: Type I dockerin domain | F: Dockerin_1 | ECOD (1.6) |
A | FIVAR_1 | e2jnkA1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: FIVAR_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1270.90 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 1.10.1330.10 | Mainly Alpha | Orthogonal Bundle | Type 1 dockerin domain | Dockerin domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00404 | Dockerin type I domain (Dockerin_1) | Dockerin type I domain | The dockerin repeat is the binding partner of the cohesin domain Pfam:PF00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome [1]. The dockerin repeats, each bearing homology to the EF-hand calciu ... | Domain | |
PF07554 | FIVAR domain (FIVAR) | FIVAR domain | This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin ( ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002105 | Dockerin type I repeat | Repeat | |
IPR016134 | Dockerin domain | Domain | |
IPR051822 | Glycosyl Hydrolase Family 84 | Family | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR029018 | Beta-hexosaminidase-like, domain 2 | Homologous Superfamily | |
IPR011496 | Beta-N-acetylglucosaminidase, catalytic domain | Domain | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
IPR036439 | Dockerin domain superfamily | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR015882 | Beta-hexosaminidase, bacterial type, N-terminal | Domain | |
IPR049019 | NagJ-like, helical domain | Domain |