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2JMW
Structure of DNA-Binding Domain of Arabidopsis GT-1
External Resource: Annotation
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
Myb_DNA-bind_4
e2jmwA1
A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: Myb_DNA-bind_4
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
1.10.10.60
Mainly Alpha
Orthogonal Bundle
Arc Repressor Mutant, subunit A
Homeodomain-like
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF13837
Myb/SANT-like DNA-binding domain (Myb_DNA-bind_4)
Myb/SANT-like DNA-binding domain
This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular Pfam:PF10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
DNA binding protein GT-1
DNA binding
sequence-specific DNA binding
sequence-specific double-stranded DNA binding
transcription cis-regulatory region binding
binding
double-stranded DNA binding
organic cyclic compound binding
nucleic acid binding
transcription regulatory region nucleic acid binding
transcription regulator activity
DNA-binding transcription factor activity
identical protein binding
protein binding
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
regulation of cellular process
cellular biosynthetic process
RNA metabolic process
regulation of primary metabolic process
nucleobase-containing compound metabolic process
RNA biosynthetic process
nucleic acid biosynthetic process
DNA-templated transcription
regulation of RNA metabolic process
regulation of nucleobase-containing compound metabolic process
regulation of RNA biosynthetic process
regulation of biosynthetic process
regulation of biological process
cellular metabolic process
biological regulation
primary metabolic process
regulation of cellular metabolic process
regulation of macromolecule metabolic process
nucleobase-containing compound biosynthetic process
gene expression
macromolecule biosynthetic process
nucleic acid metabolic process
regulation of cellular biosynthetic process
regulation of gene expression
biosynthetic process
metabolic process
regulation of macromolecule biosynthetic process
cellular process
regulation of DNA-templated transcription
macromolecule metabolic process
regulation of metabolic process
Less
membrane-bounded organelle
intracellular organelle
intracellular anatomical structure
organelle
nucleus
intracellular membrane-bounded organelle
cellular anatomical entity
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR044822
Myb/SANT-like DNA-binding domain 4
Domain
A
IPR001005
SANT/Myb domain
Domain
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