2J3W
The crystal structure of the bet3-trs31-sedlin complex.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Sedlin (SEDL) | 8030638 | 4003315 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SNARE-like | 8043017 | 3001113 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | SNARE-like | 8043017 | 3001113 | SCOP2B (2022-06-29) |
B | SCOP2 Family | TRAPP components | 8020870 | 4003802 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8033250 | 3001668 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8033250 | 3001668 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8043404 | 3001668 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8043404 | 3001668 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sedlin_N | e2j3wA1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sedlin_N | ECOD (1.6) |
C | Sedlin_N | e2j3wC1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Sedlin_N | ECOD (1.6) |
B | TRAPP | e2j3wB1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
F | TRAPP | e2j3wF1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
D | TRAPP | e2j3wD1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
E | TRAPP | e2j3wE1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: TRAPP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.70 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) | |
C | 3.30.450.70 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) | |
B | 3.30.1380.20 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
F | 3.30.1380.20 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
D | 3.30.1380.20 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
E | 3.30.1380.20 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04628 | Sedlin, N-terminal conserved region (Sedlin_N) | Sedlin, N-terminal conserved region | - | Family | |
PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family | |
PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011012 | Longin-like domain superfamily | Homologous Superfamily | |
IPR006722 | Trafficking protein particle complex subunit 2 | Family | |
IPR024096 | NO signalling/Golgi transport ligand-binding domain superfamily | Homologous Superfamily | |
IPR016696 | TRAPP I complex, subunit 5 | Family | |
IPR007194 | Transport protein particle (TRAPP) component | Family | |
IPR024096 | NO signalling/Golgi transport ligand-binding domain superfamily | Homologous Superfamily | |
IPR007194 | Transport protein particle (TRAPP) component | Family | |
IPR016721 | Bet3 family | Family |