Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d2ivka_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | automated matches | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
| B | d2ivkb_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | automated matches | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
| C | d2ivkc_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | automated matches | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
| D | d2ivkd_ | Alpha and beta proteins (a+b) | His-Me finger endonucleases | His-Me finger endonucleases | Endonuclease I | automated matches | (Vibrio vulnificus ) [TaxId: 672 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | His-Me finger endonucleases | 8037797 | 3001893 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | zf-His_Me_endon | e2ivkA1 | A: a/b three-layered sandwiches | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: zf-His_Me_endon | ECOD (v294.1) |
| B | zf-His_Me_endon | e2ivkB1 | A: a/b three-layered sandwiches | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: zf-His_Me_endon | ECOD (v294.1) |
| C | zf-His_Me_endon | e2ivkC1 | A: a/b three-layered sandwiches | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: zf-His_Me_endon | ECOD (v294.1) |
| D | zf-His_Me_endon | e2ivkD1 | A: a/b three-layered sandwiches | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: zf-His_Me_endon | ECOD (v294.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| ENDONUCLEASE I | - | - | ||
| 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*T)-3' | - | - | - | |
| 5'-D(*AP*AP*TP*TP*CP*GP*AP*TP*CP*GP *AP*AP*TP*TP*C)-3' | - | - | - | |
| 5'-D(*GP*AP*AP*TP*TP*CP*GP*AP*TP*CP *GP*AP*AP*TP*TP*C)-3' | - | - | - |
