2I5C

Crystal structure of the C-terminal PH domain of pleckstrin in complex with D-myo-Ins(1,2,3,4,5)P5

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2i5ca_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	Pleckstrin	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2i5cb_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	Pleckstrin	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2i5cc_	All beta proteins	PH domain-like barrel	PH domain-like	Pleckstrin-homology domain (PH domain)	Pleckstrin	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PH domain-like	8033935	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8033935	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8033935	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PH	e2i5cA1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
B	PH	e2i5cB1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)
C	PH	e2i5cC1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PH	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
C	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Pleckstrin	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity ion binding anion binding phosphatidylinositol-3,4-bisphosphate binding small molecule binding kinase binding protein kinase C binding enzyme binding protein kinase binding	regulation of cellular process negative regulation of small molecule metabolic process regulation of inositol phosphate biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process polyol biosynthetic process small molecule metabolic process phosphorus metabolic process negative regulation of carbohydrate metabolic process polyol metabolic process regulation of cellular process negative regulation of small molecule metabolic process regulation of inositol phosphate biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process polyol biosynthetic process small molecule metabolic process phosphorus metabolic process negative regulation of carbohydrate metabolic process polyol metabolic process regulation of biological process regulation of alcohol biosynthetic process cellular metabolic process negative regulation of metabolic process carbohydrate biosynthetic process regulation of cellular metabolic process primary metabolic process negative regulation of cellular biosynthetic process biosynthetic process organophosphate biosynthetic process inositol phosphate biosynthetic process negative regulation of alcohol biosynthetic process metabolic process regulation of phosphorus metabolic process regulation of metabolic process cellular biosynthetic process organic hydroxy compound metabolic process negative regulation of phosphate metabolic process alcohol metabolic process inositol phosphate metabolic process negative regulation of cellular process regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process small molecule biosynthetic process negative regulation of inositol phosphate biosynthetic process biological regulation regulation of cellular biosynthetic process organophosphate metabolic process negative regulation of biosynthetic process organic hydroxy compound biosynthetic process alcohol biosynthetic process negative regulation of phosphorus metabolic process cellular process regulation of carbohydrate biosynthetic process regulation of cell diameter cellular component organization regulation of cellular component size cellular component organization or biogenesis regulation of biological quality regulation of cell size regulation of anatomical structure size cellular response to stimulus response to stimulus signaling cell communication thrombin-activated receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization positive regulation of cellular component organization regulation of actin filament-based process positive regulation of biological process protein-containing complex disassembly positive regulation of actin filament depolymerization regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization actin filament-based process positive regulation of protein-containing complex disassembly positive regulation of cellular process cellular component disassembly actin polymerization or depolymerization regulation of actin filament organization actin cytoskeleton organization protein-containing complex organization regulation of protein depolymerization positive regulation of protein depolymerization positive regulation of cytoskeleton organization actin filament organization regulation of actin polymerization or depolymerization positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization supramolecular fiber organization protein depolymerization cytoskeleton organization phospholipase C-inhibiting G protein-coupled receptor signaling pathway integrin-mediated signaling pathway cell surface receptor signaling pathway transport secretion export from cell membrane docking establishment of localization vesicle-mediated transport localization organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process vesicle docking involved in exocytosis multicellular organismal process regulation of body fluid levels wound healing homotypic cell-cell adhesion cell activation hemostasis platelet aggregation blood coagulation cell adhesion cell-cell adhesion response to stress coagulation response to wounding platelet activation positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly regulation of integrin activation protein-containing complex assembly integrin activation positive regulation of integrin activation regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization actin filament bundle assembly regulation of phosphatase activity regulation of catalytic activity regulation of inositol-polyphosphate 5-phosphatase activity positive regulation of cellular metabolic process positive regulation of phosphate metabolic process positive regulation of molecular function positive regulation of metabolic process positive regulation of phosphatase activity positive regulation of phosphorus metabolic process positive regulation of dephosphorylation regulation of dephosphorylation dephosphorylation positive regulation of catalytic activity regulation of molecular function positive regulation of hydrolase activity regulation of hydrolase activity positive regulation of inositol-polyphosphate 5-phosphatase activity protein localization regulated exocytosis cellular localization establishment of protein localization nitrogen compound transport protein secretion by platelet protein localization to extracellular region establishment of localization in cell cellular macromolecule localization establishment of protein localization to extracellular region platelet degranulation protein secretion protein transport macromolecule localization cortical actin cytoskeleton organization cortical cytoskeleton organization plasma membrane bounded cell projection organization ruffle organization cell projection organization negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling regulation of signaling negative regulation of response to stimulus negative regulation of calcium-mediated signaling negative regulation of signal transduction regulation of response to stimulus calcium-mediated signaling regulation of cell communication protein kinase C signaling phosphatidylinositol metabolic process glycerophospholipid metabolic process phospholipid metabolic process cellular lipid metabolic process glycerolipid metabolic process lipid metabolic process regulation of cell activation positive regulation of platelet activation positive regulation of cell activation regulation of multicellular organismal process regulation of platelet activation positive regulation of multicellular organismal process negative regulation of G protein-coupled receptor signaling pathway regulation of G protein-coupled receptor signaling pathway developmental process cellular developmental process hemopoiesis cell differentiation anatomical structure development cell development hematopoietic progenitor cell differentiation	membrane cellular anatomical entity ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure cytoplasm membrane cellular anatomical entity ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure cytoplasm cytosol extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR001849	Pleckstrin homology domain	Domain
A, B, C	IPR000591	DEP domain	Domain
A, B, C	IPR037371	Pleckstrin, DEP domain	Domain
A, B, C	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B, C	IPR037370	Pleckstrin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: P08567	rheumatoid arthritis osteoporosis Liver Cirrhosis, Experimental sarcoidosis ulcerative colitis astrocytic tumor chronic obstructive pulmonary disease glioblastoma interstitial cystitis lung cancer osteosarcoma psoriasis Sjogren syndrome vascular disease breast carcinoma rheumatoid arthritis osteoporosis Liver Cirrhosis, Experimental sarcoidosis ulcerative colitis astrocytic tumor chronic obstructive pulmonary disease glioblastoma interstitial cystitis lung cancer osteosarcoma psoriasis Sjogren syndrome vascular disease breast carcinoma cutaneous lupus erythematosus head and neck cancer invasive ductal breast carcinoma lung carcinoma ovarian cancer subependymal giant cell astrocytoma celiac disease diabetes mellitus IgA glomerulonephritis non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.