2HK9
Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | MtdA-like | 8074728 | 3000046 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MtdA-like | 8074728 | 3000046 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MtdA-like | 8074728 | 3000046 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MtdA-like | 8074728 | 3000046 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Shikimate_DH | e2hk9A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
A | Shikimate_dh_N | e2hk9A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
B | Shikimate_DH | e2hk9B1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
B | Shikimate_dh_N | e2hk9B2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
C | Shikimate_DH | e2hk9C1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
C | Shikimate_dh_N | e2hk9C2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
D | Shikimate_DH | e2hk9D1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
D | Shikimate_dh_N | e2hk9D2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
C | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
C | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
D | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
D | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08501 | Shikimate dehydrogenase substrate binding domain (Shikimate_dh_N) | Shikimate dehydrogenase substrate binding domain | This domain is the substrate binding domain of shikimate dehydrogenase [1]. | Domain | |
PF01488 | Shikimate / quinate 5-dehydrogenase (Shikimate_DH) | Shikimate / quinate 5-dehydrogenase | - | Family | |
PF18317 | Shikimate 5'-dehydrogenase C-terminal domain (SDH_C) | Shikimate 5'-dehydrogenase C-terminal domain | This domain is found in the C-terminal region of Shikimate 5'-dehydrogenase (SDH) present in Methanocaldococcus jannaschii. SDH catalyses the NADPH-dependent reduction of 3-dehydroshikimate to shikimate in the shikimate pathway. The domain is found j ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046346 | Aminoacid dehydrogenase-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR006151 | Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase | Domain | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR022893 | Shikimate dehydrogenase family | Family | |
IPR011342 | Shikimate dehydrogenase | Family | |
IPR041121 | SDH, C-terminal | Domain | |
IPR013708 | Shikimate dehydrogenase substrate binding, N-terminal | Domain |