2GUW
Crystal structure of AMP Nucleosidase from Salmonella typhimurium LT2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2guwa_ | Alpha and beta proteins (a/b) | Phosphorylase/hydrolase-like | Purine and uridine phosphorylases | Purine and uridine phosphorylases | automated matches | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ], | SCOPe (2.08) |
B | d2guwb_ | Alpha and beta proteins (a/b) | Phosphorylase/hydrolase-like | Purine and uridine phosphorylases | Purine and uridine phosphorylases | automated matches | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ], | SCOPe (2.08) |
C | d2guwc_ | Alpha and beta proteins (a/b) | Phosphorylase/hydrolase-like | Purine and uridine phosphorylases | Purine and uridine phosphorylases | automated matches | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Purine and uridine phosphorylases | 8076059 | 3000626 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Purine and uridine phosphorylases | 8076058 | 4000573 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Purine and uridine phosphorylases | 8076059 | 3000626 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Purine and uridine phosphorylases | 8076059 | 3000626 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PNP_UDP_1 | e2guwA1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like (From Topology) | T: Peptidyl-tRNA hydrolase-like | F: PNP_UDP_1 | ECOD (1.6) |
B | PNP_UDP_1 | e2guwB1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like (From Topology) | T: Peptidyl-tRNA hydrolase-like | F: PNP_UDP_1 | ECOD (1.6) |
C | PNP_UDP_1 | e2guwC1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Peptidyl-tRNA hydrolase-like (From Topology) | T: Peptidyl-tRNA hydrolase-like | F: PNP_UDP_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1730.10 | Alpha Beta | 2-Layer Sandwich | amp nucleosidase, domain 1 | AMP nucleoside phosphorylase, N-terminal domain | CATH (4.3.0) |
A | 3.40.50.1580 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nucleoside phosphorylase domain | CATH (4.3.0) |
B | 3.30.1730.10 | Alpha Beta | 2-Layer Sandwich | amp nucleosidase, domain 1 | AMP nucleoside phosphorylase, N-terminal domain | CATH (4.3.0) |
B | 3.40.50.1580 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nucleoside phosphorylase domain | CATH (4.3.0) |
C | 3.30.1730.10 | Alpha Beta | 2-Layer Sandwich | amp nucleosidase, domain 1 | AMP nucleoside phosphorylase, N-terminal domain | CATH (4.3.0) |
C | 3.40.50.1580 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nucleoside phosphorylase domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01048 | Phosphorylase superfamily (PNP_UDP_1) | Phosphorylase superfamily | Members of this family include: purine nucleoside phosphorylase (PNP) Uridine phosphorylase (UdRPase) 5'-methylthioadenosine phosphorylase (MTA phosphorylase) | Domain | |
PF10423 | Bacterial AMP nucleoside phosphorylase N-terminus (AMNp_N) | Bacterial AMP nucleoside phosphorylase N-terminus | This is the N-terminal domain of bacterial AMP nucleoside phosphorylase (AMNp). The N- and C-termini form distinct domains which intertwine with each other to form a stable monomer which associates with five other monomers to yield the active hexamer ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR047039 | AMP nucleosidase, phosphorylase domain | Domain | |
IPR011271 | AMP nucleosidase | Family | |
IPR035994 | Nucleoside phosphorylase superfamily | Homologous Superfamily | |
IPR037109 | AMP nucleoside phosphorylase, N-terminal domain superfamily | Homologous Superfamily | |
IPR018953 | AMP nucleoside phosphorylase, N-terminal | Domain | |
IPR000845 | Nucleoside phosphorylase domain | Domain |