2GTA

Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR428.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gtaa1	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	Hypothetical protein YpjD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2gtab1	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	Hypothetical protein YpjD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d2gtac1	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	Hypothetical protein YpjD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2gtad1	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	Hypothetical protein YpjD	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2gtad2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MazG-like	8029664	4003078	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	all-alpha NTP pyrophosphatases	8042043	3001174	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8042043	3001174	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8042043	3001174	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8042043	3001174	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MazG_1	e2gtaA1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
B	MazG_1	e2gtaB2	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
C	MazG_1	e2gtaC2	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
D	MazG_1	e2gtaD1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
B	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
C	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
D	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03819	MazG nucleotide pyrophosphohydrolase domain (MazG)	MazG nucleotide pyrophosphohydrolase domain	This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in ...	This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with Pfam:PF00590. This domain is clearly related to Pfam:PF01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain Pfam:PF00293 (Bateman A pers. obs.).	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012359	NTP pyrophosphohydrolase MazG-related, YpjD	Family
A, B, C, D	IPR004518	NTP pyrophosphohydrolase MazG-like domain	Domain
A, B, C, D	IPR047046	NTP pyrophosphohydrolase MazG-related, YpjD/YvdC	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.