Annotations: 2GEC

Structure of the N-terminal domain of avian infectious bronchitis virus nucleocapsid protein (strain Gray) in a novel dimeric arrangement

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2gecb_	All beta proteins	Coronavirus RNA-binding domain	Coronavirus RNA-binding domain	Coronavirus RNA-binding domain	Nucleocapsid protein	(Infectious bronchitis virus ) [TaxId: 11120 ],	SCOPe (2.08)
A	d2geca1	All beta proteins	Coronavirus RNA-binding domain	Coronavirus RNA-binding domain	Coronavirus RNA-binding domain	Nucleocapsid protein	(Infectious bronchitis virus ) [TaxId: 11120 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8041824	3000498	SCOP2B (2022-06-29)
A	SCOP2 Family	SARS coronavirus nucleoprotein RNA-binding domain-like	8029445	4001881	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SARS coronavirus nucleoprotein RNA-binding domain-like	8041824	3000498	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PABP	e2gecB1	A: alpha arrays	X: HTH	H: PABC(PABP) domain	T: PABC(PABP) domain	F: PABP	ECOD (v295.2)
A	CoV_nucleocap	e2gecA1	A: beta complex topology	X: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	H: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	T: Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)	F: CoV_nucleocap	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part other organism part host cell cytoplasm part host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment cellular anatomical structure host cell cytoplasm host cell part host intracellular region protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001218	Nucleocapsid protein, coronavirus	Family
A, B	IPR044344	Nucleocapsid (N) protein, C-terminal domain, coronavirus	Domain
A, B	IPR042547	Nucleocapsid protein, gammacoronavirus	Family
A, B	IPR037195	Nucleocapsid protein, N-terminal	Homologous Superfamily
A, B	IPR037179	Nucleocapsid protein, C-terminal	Homologous Superfamily
A, B	IPR044345	Nucleocapsid (N) protein, N-terminal domain, coronavirus	Domain