2GCJ
Crystal Structure of the Pob3 middle domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2gcja1 | All beta proteins | PH domain-like barrel | PH domain-like | SSRP1-like | FACT complex subunit POB3, middle domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d2gcjb_ | All beta proteins | PH domain-like barrel | PH domain-like | SSRP1-like | FACT complex subunit POB3, middle domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
C | d2gcjc_ | All beta proteins | PH domain-like barrel | PH domain-like | SSRP1-like | FACT complex subunit POB3, middle domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
D | d2gcjd_ | All beta proteins | PH domain-like barrel | PH domain-like | SSRP1-like | FACT complex subunit POB3, middle domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PH domain-like | 8103655 | 3000134 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PH domain-like | 8041841 | 3000134 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PH domain-like | 8041841 | 3000134 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PH domain-like | 8103655 | 3000134 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PH domain-like | 8041841 | 3000134 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PH domain-like | 8103655 | 3000134 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PH domain-like | 8041841 | 3000134 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PH domain-like | 8103655 | 3000134 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rtt106 | e2gcjA2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Rtt106 | ECOD (1.6) |
A | PH1_SSRP1-like | e2gcjA1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH1_SSRP1-like | ECOD (1.6) |
B | Rtt106 | e2gcjB2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Rtt106 | ECOD (1.6) |
B | PH1_SSRP1-like | e2gcjB1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH1_SSRP1-like | ECOD (1.6) |
C | Rtt106 | e2gcjC1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Rtt106 | ECOD (1.6) |
C | PH1_SSRP1-like | e2gcjC2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH1_SSRP1-like | ECOD (1.6) |
D | Rtt106 | e2gcjD1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Rtt106 | ECOD (1.6) |
D | PH1_SSRP1-like | e2gcjD2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH1_SSRP1-like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.29.150 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
A | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
B | 2.30.29.150 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
B | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
C | 2.30.29.150 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
C | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
D | 2.30.29.150 | Mainly Beta | Roll | PH-domain like | CATH (4.3.0) | |
D | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21103 | SSRP1 PH domain (PH1_SSRP1-like) | SSRP1 PH domain | SSRP1 is a component of FACT (facilitator of chromatin transcription), an essential chromatin reorganizing factor. This entry represents the first of two PH-like domains in these proteins [1-3]. | Domain | |
PF08512 | Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle) | Histone chaperone Rttp106-like, middle domain | This Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038167 | SSRP1 domain superfamily | Homologous Superfamily | |
IPR050454 | RTT106/SSRP1 Histone Chaperone/FACT Complex | Family | |
IPR035417 | FACT complex subunit SSRP1/POB3, N-terminal PH domain | Domain | |
IPR000969 | FACT complex subunit SSRP1/POB3 | Family | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR013719 | Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain | Domain | |
IPR048993 | FACT complex subunit SSRP1-like, first PH domain | Domain | |
IPR024954 | SSRP1, dimerization domain | Domain |