2GC4
Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | YVTN repeat-like/Quinoprotein amine dehydrogenase | 8042846 | 3001671 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | YVTN repeat-like/Quinoprotein amine dehydrogenase | 8042846 | 3001671 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | YVTN repeat-like/Quinoprotein amine dehydrogenase | 8042846 | 3001671 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | YVTN repeat-like/Quinoprotein amine dehydrogenase | 8042846 | 3001671 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Methylamine dehydrogenase, L chain | 8041821 | 3000932 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Methylamine dehydrogenase, L chain | 8041821 | 3000932 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Methylamine dehydrogenase, L chain | 8041821 | 3000932 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Methylamine dehydrogenase, L chain | 8041821 | 3000932 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cupredoxins | 8035199 | 3000886 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Cupredoxins | 8035199 | 3000886 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Cupredoxins | 8035199 | 3000886 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Cupredoxins | 8035199 | 3000886 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cytochrome c | 8041823 | 3000815 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Cytochrome c | 8041823 | 3000815 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Cytochrome c | 8041823 | 3000815 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Cytochrome c | 8041823 | 3000815 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Me-amine-dh_H | e2gc4A1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Me-amine-dh_H | ECOD (1.6) |
E | Me-amine-dh_H | e2gc4E1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Me-amine-dh_H | ECOD (1.6) |
I | Me-amine-dh_H | e2gc4I1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Me-amine-dh_H | ECOD (1.6) |
M | Me-amine-dh_H | e2gc4M1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Me-amine-dh_H | ECOD (1.6) |
B | Me-amine-dh_L | e2gc4B1 | A: few secondary structure elements | X: Methylamine dehydrogenase, L chain (From Topology) | H: Methylamine dehydrogenase, L chain (From Topology) | T: Methylamine dehydrogenase, L chain | F: Me-amine-dh_L | ECOD (1.6) |
F | Me-amine-dh_L | e2gc4F1 | A: few secondary structure elements | X: Methylamine dehydrogenase, L chain (From Topology) | H: Methylamine dehydrogenase, L chain (From Topology) | T: Methylamine dehydrogenase, L chain | F: Me-amine-dh_L | ECOD (1.6) |
J | Me-amine-dh_L | e2gc4J1 | A: few secondary structure elements | X: Methylamine dehydrogenase, L chain (From Topology) | H: Methylamine dehydrogenase, L chain (From Topology) | T: Methylamine dehydrogenase, L chain | F: Me-amine-dh_L | ECOD (1.6) |
N | Me-amine-dh_L | e2gc4N1 | A: few secondary structure elements | X: Methylamine dehydrogenase, L chain (From Topology) | H: Methylamine dehydrogenase, L chain (From Topology) | T: Methylamine dehydrogenase, L chain | F: Me-amine-dh_L | ECOD (1.6) |
C | Copper-bind | e2gc4C1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Copper-bind | ECOD (1.6) |
G | Copper-bind | e2gc4G1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Copper-bind | ECOD (1.6) |
K | Copper-bind | e2gc4K1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Copper-bind | ECOD (1.6) |
O | Copper-bind | e2gc4O1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Copper-bind | ECOD (1.6) |
D | Cytochrome_CBB3 | e2gc4D1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
H | Cytochrome_CBB3 | e2gc4H1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
L | Cytochrome_CBB3 | e2gc4L1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
P | Cytochrome_CBB3 | e2gc4P1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06433 | Methylamine dehydrogenase heavy chain (MADH) (Me-amine-dh_H) | Methylamine dehydrogenase heavy chain (MADH) | - | Repeat | |
PF02975 | Methylamine dehydrogenase, L chain (Me-amine-dh_L) | Methylamine dehydrogenase, L chain | - | Domain | |
PF00127 | Copper binding proteins, plastocyanin/azurin family (Copper-bind) | Copper binding proteins, plastocyanin/azurin family | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Methylamine dehydrogenase heavy chain | ||||
Methylamine dehydrogenase light chain | ||||
Amicyanin | - | |||
Cytochrome c-L |