2G77
Crystal Structure of Gyp1 TBC domain in complex with Rab33 GTPase bound to GDP and AlF3
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2g77a2 | All alpha proteins | Left-handed superhelix | Ypt/Rab-GAP domain of gyp1p | Ypt/Rab-GAP domain of gyp1p | Ypt/Rab-GAP domain of gyp1p, C-terminal domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
A | d2g77a1 | All alpha proteins | Left-handed superhelix | Ypt/Rab-GAP domain of gyp1p | Ypt/Rab-GAP domain of gyp1p | Ypt/Rab-GAP domain of gyp1p, N-terminal domain | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d2g77b1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Rab-33b | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ypt/Rab-GAP domain of gyp1p | 8029340 | 4001082 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Ypt/Rab-GAP domain of gyp1p | 8029341 | 4001082 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ypt/Rab-GAP domain of gyp1p | 8041719 | 3000698 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ypt/Rab-GAP domain of gyp1p | 8041720 | 3000698 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057384 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RabGAP-TBC_N | e2g77A1 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: RabGAP-TBC_N | ECOD (1.6) |
A | RabGAP-TBC_C_2 | e2g77A2 | A: alpha arrays | X: Ypt/Rab-GAP domain of gyp1p-like | H: Ypt/Rab-GAP domain of gyp1p (From Topology) | T: Ypt/Rab-GAP domain of gyp1p | F: RabGAP-TBC_C_2 | ECOD (1.6) |
B | Ras | e2g77B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.472.80 | Mainly Alpha | Orthogonal Bundle | Cyclin A | domain 1 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00566 | Rab-GTPase-TBC domain (RabGAP-TBC) | Rab-GTPase-TBC domain | - | Family | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035969 | Rab-GAP-TBC domain superfamily | Homologous Superfamily | |
IPR000195 | Rab-GAP-TBC domain | Domain | |
IPR041822 | Rab33A/B | Family | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |