2G3K
Crystal structure of the C-terminal domain of Vps28
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8043070 | 3001082 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | VPS28_C | e2g3kA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
B | VPS28_C | e2g3kB1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
C | VPS28_C | e2g3kC1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
D | VPS28_C | e2g3kD1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
E | VPS28_C | e2g3kE1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
F | VPS28_C | e2g3kF1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
G | VPS28_C | e2g3kG1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: VPS28_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
B | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
C | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
D | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
E | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
F | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
G | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037206 | VPS28, C-terminal domain superfamily | Homologous Superfamily | |
IPR007143 | Vacuolar protein sorting-associated Vps28 | Family | |
IPR017899 | Vacuolar protein sorting-associated, VPS28, C-terminal | Domain | |
IPR017898 | Vacuolar protein sorting-associated, VPS28, N-terminal | Domain | |
IPR038358 | VPS28, N-terminal domain superfamily | Homologous Superfamily | |
IPR037202 | ESCRT assembly domain | Homologous Superfamily |