2G0C
Structure of the RNA binding domain (residues 404-479) of the Bacillus subtilis YxiN protein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03880 | DbpA RNA binding domain (DbpA) | DbpA RNA binding domain | This RNA binding domain is found at the C-terminus of a number of DEAD helicase proteins [1]. It is sufficient to confer specificity for hairpin 92 of 23S rRNA, which is part of the ribosomal A-site. However, several members of this family lack spe ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR000629 | ATP-dependent RNA helicase DEAD-box, conserved site | Conserved Site | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR005580 | DEAD box helicase DbpA/CsdA, RNA-binding domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR028619 | ATP-dependent RNA helicase DbpA | Family | |
IPR014014 | RNA helicase, DEAD-box type, Q motif | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |