2FRX
Crystal structure of YebU, a m5C RNA methyltransferase from E.coli
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Methyltranf_PUA_1 | e2frxA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: Methyltranf_PUA_1 | ECOD (1.6) |
A | yebU | e2frxA3 | A: a+b two layers | X: Cystatin-like | H: Pre-PUA domain (From Topology) | T: Pre-PUA domain | F: yebU | ECOD (1.6) |
A | Methyltr_RsmB-F_1 | e2frxA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
B | Methyltranf_PUA_1 | e2frxB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: Methyltranf_PUA_1 | ECOD (1.6) |
B | yebU | e2frxB3 | A: a+b two layers | X: Cystatin-like | H: Pre-PUA domain (From Topology) | T: Pre-PUA domain | F: yebU | ECOD (1.6) |
B | Methyltr_RsmB-F_1 | e2frxB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
C | Methyltranf_PUA_1 | e2frxC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: Methyltranf_PUA_1 | ECOD (1.6) |
C | yebU | e2frxC3 | A: a+b two layers | X: Cystatin-like | H: Pre-PUA domain (From Topology) | T: Pre-PUA domain | F: yebU | ECOD (1.6) |
C | Methyltr_RsmB-F_1 | e2frxC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
D | Methyltranf_PUA_1 | e2frxD4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: Methyltranf_PUA_1 | ECOD (1.6) |
D | yebU | e2frxD3 | A: a+b two layers | X: Cystatin-like | H: Pre-PUA domain (From Topology) | T: Pre-PUA domain | F: yebU | ECOD (1.6) |
D | Methyltr_RsmB-F_1 | e2frxD2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
A | 3.10.450.720 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 3.10.450.720 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
C | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
C | 3.10.450.720 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
D | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
D | 3.10.450.720 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13636 | RNA-binding PUA-like domain of methyltransferase RsmF (Methyltranf_PUA) | RNA-binding PUA-like domain of methyltransferase RsmF | - | Family | |
PF17125 | N-terminal domain of 16S rRNA methyltransferase RsmF (Methyltr_RsmF_N) | N-terminal domain of 16S rRNA methyltransferase RsmF | This is the N-terminal domain of the RsmF methyl transferase. RsmF is a multi-site-specific methyltransferase that is responsible for the synthesis of three modifications on cytidines in 16S ribosomal RNA. The N-terminus is critical for stabilising t ... | Domain | |
PF21150 | Ribosomal RNA small subunit methyltransferase F, pre-PUA domain (YebU_pre-PUA_dom) | Ribosomal RNA small subunit methyltransferase F, pre-PUA domain | This domain is found in Ribosomal RNA small subunit methyltransferase F from Escherichia coli (YebU) and similar proteins mainly from proteobacteria. YebU requires S-adenosyl-l-methionine (SAM) to specifically methylate the cytosine at position 1407 ... | Domain | |
PF01189 | 16S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F) | 16S rRNA methyltransferase RsmB/F | - | Family |