2F9D
2.5 angstrom resolution structure of the spliceosomal protein p14 bound to region of SF3b155
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2f9da1 | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Canonical RBD | Pre-mRNA branch site protein p14 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2f9db_ | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | Canonical RBD | Pre-mRNA branch site protein p14 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth P] | d2f9dp_ | Peptides | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth Q] | d2f9dq_ | Peptides | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | Splicing factor 3B subunit 1 fragment | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00076 | e2f9dA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
B | PF00076 | e2f9dB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
B | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000504 | RNA recognition motif domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR034150 | SF3B6, RNA recognition motif | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
C [auth P], D [auth Q] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
C [auth P], D [auth Q] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
C [auth P], D [auth Q] | IPR015016 | Splicing factor 3B subunit 1 | Domain |
C [auth P], D [auth Q] | IPR038737 | Splicing factor 3B subunit 1-like | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q9Y3B4 | :