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Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2B Superfamily FYVE/PHD zinc finger 8067574 3001459 SCOP2B (2021-05-27) A SCOP2B Superfamily Bromodomain 8084225 3001843 SCOP2B (2021-05-27) B SCOP2B Superfamily FYVE/PHD zinc finger 8067574 3001459 SCOP2B (2021-05-27) B SCOP2B Superfamily Bromodomain 8084225 3001843 SCOP2B (2021-05-27) C SCOP2B Superfamily Bromodomain 8084225 3001843 SCOP2B (2021-05-27) C SCOP2B Superfamily FYVE/PHD zinc finger 8067574 3001459 SCOP2B (2021-05-27)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF00439 e2f6jA3 A: alpha bundles X: Bromodomain-like H: Bromodomain (From Topology) T: Bromodomain F: PF00439 ECOD (1.6) A PF00628 e2f6jA4 A: few secondary structure elements X: RING/U-box-like H: RING/U-box-like T: FYVE/PHD zinc finger F: PF00628 ECOD (1.6) B PF00439 e2f6jB1 A: alpha bundles X: Bromodomain-like H: Bromodomain (From Topology) T: Bromodomain F: PF00439 ECOD (1.6) B PF00628 e2f6jB2 A: few secondary structure elements X: RING/U-box-like H: RING/U-box-like T: FYVE/PHD zinc finger F: PF00628 ECOD (1.6) C PF00439 e2f6jC1 A: alpha bundles X: Bromodomain-like H: Bromodomain (From Topology) T: Bromodomain F: PF00439 ECOD (1.6) C PF00628 e2f6jC2 A: few secondary structure elements X: RING/U-box-like H: RING/U-box-like T: FYVE/PHD zinc finger F: PF00628 ECOD (1.6)
Chains Accession Name Description Comments Source PF00439 Bromodomain (Bromodomain) Bromodomain Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. Domain PF00628 PHD-finger (PHD) PHD-finger PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. Domain
Chains Polymer Molecular Function Biological Process Cellular Component bromodomain PHD finger transcription factor D [auth P] histone H3, N-terminal - - -
Protein Modification Annotation