2E89
Crystal structure of Aquifex aeolicus TilS in a complex with ATP, Magnesium ion, and L-lysine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Adenine nucleotide alpha hydrolases-like | 8033389 | 3001593 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MesJ substrate recognition domain-like | 8033391 | 3000685 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MesJ substrate recognition domain-like | 8033391 | 3000685 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Adenine nucleotide alpha hydrolases-like | 8033389 | 3001593 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MesJ substrate recognition domain-like | 8033391 | 3000685 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Adenine nucleotide alpha hydrolases-like | 8033389 | 3001593 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MesJ substrate recognition domain-like | 8033391 | 3000685 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Adenine nucleotide alpha hydrolases-like | 8033389 | 3001593 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22132 | e2e89A1 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: PF22132 | ECOD (1.6) |
A | PF01171 | e2e89A2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF01171 | ECOD (1.6) |
B | PF22132 | e2e89B1 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: PF22132 | ECOD (1.6) |
B | PF01171 | e2e89B2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF01171 | ECOD (1.6) |
C | PF22132 | e2e89C1 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: PF22132 | ECOD (1.6) |
C | PF01171 | e2e89C2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF01171 | ECOD (1.6) |
D | PF22132 | e2e89D1 | A: a+b two layers | X: MesJ substrate recognition domain-like (From Topology) | H: MesJ substrate recognition domain-like (From Topology) | T: MesJ substrate recognition domain-like | F: PF22132 | ECOD (1.6) |
D | PF01171 | e2e89D2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF01171 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 1.20.59.20 | Mainly Alpha | Up-down Bundle | Chorismate Mutase Domain, subunit A | CATH (4.3.0) | |
B | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B | 1.20.59.20 | Mainly Alpha | Up-down Bundle | Chorismate Mutase Domain, subunit A | CATH (4.3.0) | |
C | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
C | 1.20.59.20 | Mainly Alpha | Up-down Bundle | Chorismate Mutase Domain, subunit A | CATH (4.3.0) | |
D | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
D | 1.20.59.20 | Mainly Alpha | Up-down Bundle | Chorismate Mutase Domain, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01171 | PP-loop family (ATP_bind_3) | PP-loop family | - | Family | |
PF22132 | TilS-like substrate binding domain (TilS-like) | TilS-like substrate binding domain | This entry represents a C-terminal domain (CTD) present in TilS ligases proteins, probably implicated in the recognition of the tRNA accetor stem [1]. TilS ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) th ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011063 | tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal | Domain | |
IPR012795 | tRNA(Ile)-lysidine synthase, N-terminal | Domain | |
IPR012094 | tRNA(Ile)-lysidine synthase | Family | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |