Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Carbon-nitrogen hydrolases | 8082405 | 3001086 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | HTHP | e2e2kF1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
| E | HTHP | e2e2kE1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
| D | HTHP | e2e2kD1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
| C | HTHP | e2e2kC1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
| B | HTHP | e2e2kB1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
| A | HTHP | e2e2kA1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: HTHP | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
| E | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
| D | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
| C | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
| B | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
| A | 3.60.110.10 | Alpha Beta | 4-Layer Sandwich | Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00795 | Carbon-nitrogen hydrolase (CN_hydrolase) | Carbon-nitrogen hydrolase | This family contains hydrolases that break carbon-nitrogen bonds [1]. The family includes: Nitrilase EC:3.5.5.1 Swiss:Q42965, Aliphatic amidase EC:3.5.1.4 Swiss:Q01360, Biotidinase EC:3.5.1.12 Swiss:P43251, Beta-ureidopropionase EC:3.5.1.6 Swiss:Q03 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Formamidase | - | - |