2DU4
Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | PF18006 | e2du4A2 | A: a+b two layers | X: Alpha-beta plaits | H: O-phosphoseryl-tRNA synthetase C-terminal domain (From Topology) | T: O-phosphoseryl-tRNA synthetase C-terminal domain | F: PF18006 | ECOD (1.6) |
B [auth A] | PF01409 | e2du4A3 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF01409 | ECOD (1.6) |
C [auth B] | PF18006 | e2du4B2 | A: a+b two layers | X: Alpha-beta plaits | H: O-phosphoseryl-tRNA synthetase C-terminal domain (From Topology) | T: O-phosphoseryl-tRNA synthetase C-terminal domain | F: PF18006 | ECOD (1.6) |
C [auth B] | PF01409 | e2du4B3 | A: a+b three layers | X: Class II aaRS and biotin synthetases (From Topology) | H: Class II aaRS and biotin synthetases (From Topology) | T: Class II aaRS and biotin synthetases | F: PF01409 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
C [auth B] | 3.30.930.10 | Alpha Beta | 2-Layer Sandwich | BirA Bifunctional Protein | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], C [auth B] | PF01409 | tRNA synthetases class II core domain (F) (tRNA-synt_2d) | tRNA synthetases class II core domain (F) | Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. | Domain |
B [auth A], C [auth B] | PF18006 | O-phosphoseryl-tRNA synthetase C-terminal domain (SepRS_C) | O-phosphoseryl-tRNA synthetase C-terminal domain | The SSHS domain is mainly found in Archaea. The domain makes up part of the anticodon binding domain at the C-terminal of O-phosphoserine--tRNA(Cys) ligase [1,2]. | Domain |