Annotations: 2DRV

Structure of PH1069 protein from Pyrococcus horikoshii OT3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	SSo0622-like	8089287	4002910	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SSo0622-like	8089288	3001884	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	SSo0622-like	8089288	3001884	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rpf1_C	e2drvB1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (v294.2)
A	Glyco_hydro_16	e2drvA1	A: beta barrels	X: Profilin-like	H: sensor domains	T: sensor domains	F: Glyco_hydro_16	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1960.10	Alpha Beta	2-Layer Sandwich	SSo0622-like fold	tRNA wybutosine-synthesizing-like	CATH (4.3.0)
A	3.30.1960.10	Alpha Beta	2-Layer Sandwich	SSo0622-like fold	tRNA wybutosine-synthesizing-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	UPF0130 protein PH1069	tRNA methyltransferase activity RNA methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity methyltransferase activity catalytic activity	RNA metabolic process carbohydrate derivative metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process tRNA processing RNA processing carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process wybutosine biosynthetic process tRNA modification primary metabolic process gene expression nucleobase-containing compound biosynthetic process RNA metabolic process carbohydrate derivative metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process tRNA processing RNA processing carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process wybutosine biosynthetic process tRNA modification primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process RNA modification biosynthetic process macromolecule modification metabolic process cellular process macromolecule metabolic process macromolecule methylation methylation RNA methylation tRNA methylation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR022908	tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase	Family
A, B	IPR003827	tRNA wybutosine-synthesizing protein	Domain
A, B	IPR036602	tRNA wybutosine-synthesizing-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.