2D7C
Crystal structure of human Rab11 in complex with FIP3 Rab-binding domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d2d7cb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Rab11a | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d2d7ca_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Rab11a | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d2d7cd_ | Coiled coil proteins | Parallel coiled-coil | Eferin C-derminal domain-like | Eferin C-derminal domain-like | Rab11 family-interacting protein 3 (Rab11-FIP3, Eferin) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d2d7cc1 | Coiled coil proteins | Parallel coiled-coil | Eferin C-derminal domain-like | Eferin C-derminal domain-like | Rab11 family-interacting protein 3 (Rab11-FIP3, Eferin) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057254 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Eferin C-derminal domain-like | 8039617 | 3000568 | SCOP2B (2022-06-29) |
C | SCOP2 Family | FIP domain-like | 8027238 | 4000554 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Eferin C-derminal domain-like | 8039617 | 3000568 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Ras | e2d7cB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
A | Ras | e2d7cA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D | 1.20.5.2440 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C | 1.20.5.2440 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF09457 | FIP domain (RBD-FIP) | FIP domain | - | Motif |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR050209 | Rab GTPases family involved in membrane trafficking | Family | |
IPR037245 | FIP-RBD, C-terminal domain superfamily | Homologous Superfamily | |
IPR002048 | EF-hand domain | Domain | |
IPR011992 | EF-hand domain pair | Homologous Superfamily | |
IPR051977 | Rab11-interacting regulator of endocytosis and ciliogenesis | Family | |
IPR019018 | Rab-binding domain FIP-RBD | Domain |