2CHQ
Replication Factor C ADPNP complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08542 | e2chqA5 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
A | PF21960 | e2chqA6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
A | PF00004 | e2chqA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B | PF08542 | e2chqB5 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
B | PF21960 | e2chqB6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
B | PF00004 | e2chqB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF08542 | e2chqC5 | A: alpha arrays | X: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | H: DNA polymerase III clamp loader subunits, C-terminal domain (From Topology) | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: PF08542 | ECOD (1.6) |
C | PF21960 | e2chqC6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21960 | ECOD (1.6) |
C | PF00004 | e2chqC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.2.0) |
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.2.0) |
A | 1.20.272.10 | Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime | domain 3 | CATH (4.2.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.2.0) |
B | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.2.0) |
B | 1.20.272.10 | Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime | domain 3 | CATH (4.2.0) |
C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.2.0) |
C | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.2.0) |
C | 1.20.272.10 | Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime | domain 3 | CATH (4.2.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08542 | Replication factor C C-terminal domain (Rep_fac_C) | Replication factor C C-terminal domain | This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which resul ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | Homologous Superfamily | |
IPR013748 | Replication factor C, C-terminal | Domain | |
IPR047854 | Replication factor C, lid domain | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR023748 | Replication factor C small subunit, archaeal | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |