2CDH | pdb_00002cdh

ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYNTHASE AT 5 ANGSTROM RESOLUTION.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
CA [auth S]	d2cdhs1	Low resolution protein structures	Fatty acid synthase	Fatty acid synthase	Fatty acid syntase	Fungal fatty acid syntase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
V [auth L]	d2cdhl1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
U [auth K]	d2cdhk1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
T [auth J]	d2cdhj1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
S [auth I]	d2cdhi1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
R [auth H]	d2cdhh1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
Q [auth G]	d2cdhg1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	beta-keto acyl carrier protein reductase	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
P [auth F]	d2cdhf2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
P [auth F]	d2cdhf1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
O [auth E]	d2cdhe2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
O [auth E]	d2cdhe1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
N [auth D]	d2cdhd2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
N [auth D]	d2cdhd1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
M [auth C]	d2cdhc2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
M [auth C]	d2cdhc1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
L [auth B]	d2cdhb2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
L [auth B]	d2cdhb1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
K [auth A]	d2cdha2	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, C-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)
K [auth A]	d2cdha1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	Thiolase-related	Beta-ketoacyl-ACP synthase I, N-terminal domain	(Thermomyces lanuginosus ) [TaxId: 5541 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V [auth L]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
T [auth J]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
S [auth I]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
R [auth H]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
Q [auth G]	SCOP2B Superfamily	SDR-like	8057092	3000038	SCOP2B (2022-06-29)
P [auth F]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)
P [auth F]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
O [auth E]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
O [auth E]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)
N [auth D]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
N [auth D]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)
M [auth C]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
M [auth C]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)
L [auth B]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)
L [auth B]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
K [auth A]	SCOP2B Superfamily	Thiolase-like	8037437	3000122	SCOP2B (2022-06-29)
K [auth A]	SCOP2B Superfamily	Thiolase-like	8037440	3000122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
HA [auth X]	Hepar_II_III	e2cdhX1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
GA [auth W]	Hepar_II_III	e2cdhW1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
FA [auth V]	Hepar_II_III	e2cdhV1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
EA [auth U]	Hepar_II_III	e2cdhU1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
DA [auth T]	Hepar_II_III	e2cdhT1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
CA [auth S]	ADH_N	e2cdhS1	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: ADH_N	ECOD (v294.2)
V [auth L]	KR	e2cdhL1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
U [auth K]	KR	e2cdhK1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
T [auth J]	KR	e2cdhJ1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
S [auth I]	KR	e2cdhI1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
R [auth H]	KR	e2cdhH1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
Q [auth G]	KR	e2cdhG1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
P [auth F]	Chal_sti_synt_N	e2cdhF1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
O [auth E]	Chal_sti_synt_N	e2cdhE1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
N [auth D]	Chal_sti_synt_N	e2cdhD1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
M [auth C]	Chal_sti_synt_N	e2cdhC1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
L [auth B]	Chal_sti_synt_N	e2cdhB1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
K [auth A]	Chal_sti_synt_N	e2cdhA1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Chal_sti_synt_N	ECOD (v294.2)
Z [auth P]	Hepar_II_III	e2cdhP1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
Y [auth O]	Hepar_II_III	e2cdhO1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
X [auth N]	Hepar_II_III	e2cdhN1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
W [auth M]	Hepar_II_III	e2cdhM1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
J [auth 9]	Hepar_II_III	e2cdh91	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
I [auth 8]	Hepar_II_III	e2cdh81	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
H [auth 7]	Hepar_II_III	e2cdh71	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
G [auth 6]	Hepar_II_III	e2cdh61	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
F [auth 5]	Hepar_II_III	e2cdh51	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
E [auth 4]	ADH_N	e2cdh41	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: ADH_N	ECOD (v294.2)
BA [auth R]	Hepar_II_III	e2cdhR1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
AA [auth Q]	Hepar_II_III	e2cdhQ1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
JA [auth Z]	Hepar_II_III	e2cdhZ1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
IA [auth Y]	Hepar_II_III	e2cdhY1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
D [auth 3]	Hepar_II_III	e2cdh31	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
C [auth 2]	Hepar_II_III	e2cdh21	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
B [auth 1]	Hepar_II_III	e2cdh11	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.2)
A [auth 0]	ADH_N	e2cdh01	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: ADH_N	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	PF02801	Beta-ketoacyl synthase, C-terminal domain (Ketoacyl-synt_C)	Beta-ketoacyl synthase, C-terminal domain	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.	Domain
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	PF00109	Beta-ketoacyl synthase, N-terminal domain (ketoacyl-synt)	Beta-ketoacyl synthase, N-terminal domain	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains m ...	The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth S], DA [auth T], EA [auth U], FA [auth V], GA [auth W], CA [auth S], DA [auth T], EA [auth U], FA [auth V], GA [auth W], HA [auth X]	DEHYDRATASE	-	-	-
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	KETOACYL REDUCTASE	NAD binding binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	KETOACYL SYNTHASE	acyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity	fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process monounsaturated fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process monounsaturated fatty acid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process monounsaturated fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process monounsaturated fatty acid metabolic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
AA [auth Q], BA [auth R], E [auth 4], F [auth 5], G [auth 6], AA [auth Q], BA [auth R], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], W [auth M], X [auth N], Y [auth O], Z [auth P]	MALONYL/PALMITOYL TRANSFERASE	-	-	-
A [auth 0], B [auth 1], C [auth 2], D [auth 3], IA [auth Y], A [auth 0], B [auth 1], C [auth 2], D [auth 3], IA [auth Y], JA [auth Z]	ENOYL REDUCTASE	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR011284	3-oxoacyl-(acyl-carrier-protein) reductase	Family
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR057326	Ketoreductase domain	Domain
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR050259	Short-chain dehydrogenases/reductases	Family
Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L]	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR014031	Beta-ketoacyl synthase, C-terminal domain	Domain
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR016039	Thiolase-like	Homologous Superfamily
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR000794	Beta-ketoacyl synthase	Family
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR018201	Beta-ketoacyl synthase, active site	Active Site
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR020841	Polyketide synthase, beta-ketoacyl synthase domain	Domain
K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F]	IPR014030	Beta-ketoacyl synthase-like, N-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.