2BW3
Three-dimensional structure of the Hermes DNA transposase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d2bw3b1 | All alpha proteins | Hermes dimerisation domain | Hermes dimerisation domain | Hermes dimerisation domain | Transposase Hermes, dimerisation domain | HOUSE FLY (Musca domestica ) [TaxId: 7370 ], | SCOPe (2.08) |
A | d2bw3a1 | All alpha proteins | Hermes dimerisation domain | Hermes dimerisation domain | Hermes dimerisation domain | Transposase Hermes, dimerisation domain | HOUSE FLY (Musca domestica ) [TaxId: 7370 ], | SCOPe (2.08) |
A | d2bw3a2 | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Hermes transposase-like | Transposase Hermes, catalytic domain | HOUSE FLY (Musca domestica ) [TaxId: 7370 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Hermes transposase-like | 8026345 | 4003051 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Hermes dimerisation domain | 8026346 | 4001634 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8038724 | 3000143 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Hermes dimerisation domain | 8038725 | 3002013 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | DBD_Tnp_Hermes | e2bw3B1 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: DBD_Tnp_Hermes | ECOD (1.6) |
A | DBD_Tnp_Hermes | e2bw3A1 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: DBD_Tnp_Hermes | ECOD (1.6) |
A | Dimer_Tnp_hAT | e2bw3A2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Dimer_Tnp_hAT | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.3.0) |
A | 1.10.10.1070 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Zinc finger, BED domain-containing | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10683 | Hermes transposase DNA-binding domain (DBD_Tnp_Hermes) | Hermes transposase DNA-binding domain | This domain confers specific DNA-binding on Hermes transposase [1]. | Domain | |
PF10683 | Hermes transposase DNA-binding domain (DBD_Tnp_Hermes) | Hermes transposase DNA-binding domain | This domain confers specific DNA-binding on Hermes transposase [1]. | Domain | |
PF05699 | hAT family C-terminal dimerisation region (Dimer_Tnp_hAT) | hAT family C-terminal dimerisation region | This dimerisation region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation region forms extremely stable dimers in vitro [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR052717 | Vacuolar processing and transposase activity regulators | Family | |
IPR018473 | Hermes trasposase, DNA-binding domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR003656 | Zinc finger, BED-type | Domain | |
IPR008906 | HAT, C-terminal dimerisation domain | Domain | |
IPR052717 | Vacuolar processing and transposase activity regulators | Family | |
IPR018473 | Hermes trasposase, DNA-binding domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR003656 | Zinc finger, BED-type | Domain | |
IPR008906 | HAT, C-terminal dimerisation domain | Domain |